Gh465, Gh465 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh465
Genbank IDDQ908404
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908404
Source Typegenomic
Repeat MotifAG(14)
Primer 1Gh465_F: AAGTCAAAAGGAAGAGACGCTTCG
Primer 2Gh465_R: AAATTCACCTTCTGGCAGTGACAC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908404
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A08chromosomeA08:35504417..35504547 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018222.1chromosomeCM018222.1:21112850..21112962 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018209.1chromosomeCM018209.1:31488624..31488755 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:19792962..19793099 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:39693650..39693772 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_08chromosomeD10_08:26929610..26929738 +Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr4chromosomeAt_chr4:12383399..12383530 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:20623727..20623855 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A08chromosomeA08:31762300..31762431 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:20730330..20730458 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A08chromosomeGhir_A08:32310786..32310915 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:20519070..20519198 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:32824580..32824711 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:20274774..20274902 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:33155864..33155995 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:20702252..20702380 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A08chromosomeA08:43994646..43994777 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At08chromosomeAt08:34482637..34482768 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold473supercontigscaffold473:30761..30892 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4235supercontigscaffold4235:500384..500496 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D08chromosomeGbar_D08:21041339..21041451 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A08chromosomeGbar_A08:32255842..32255971 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:21250056..21250168 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A08chromosomeA08:31430303..31430434 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:21110035..21110163 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017617.1chromosomeCM017617.1:31754739..31754884 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:22334676..22334804 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017643.1chromosomeCM017643.1:33891839..33891982 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:21190708..21190820 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017695.1chromosomeCM017695.1:31757639..31757772 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:21058633..21058761 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A08chromosomeA08:33989599..33989730 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:35515626..35515755 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:38851413..38851536 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr08chromosomeChr08:19682075..19682211 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_08chromosomeB_08:32456012..32456157 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr04chromosomeChr04:20378255..20378385 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr04chromosomechr04:16525135..16525263 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr04chromosomeChr04:20304011..20304141 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:14319790..14319920 -Gossypium aridum (D4) genome ISU_v1n/a
Chr04chromosomeChr04:11929000..11929120 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr04chromosomeChr04:14290357..14290489 -Gossypium lobatum (D7) genome ISU_v1n/a
F08chromosomeF08:30631674..30631824 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr08chromosomeChr08:142242971..142243092 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr04chromosomeGh465:1..541 .
Chr04:19629423..19629971 -		n/a
Chr4chromosomeGh465:1..541 .
Chr4:19082830..19083378 -		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908404DQ908404Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch24_Dt.08N/A28.24Gh465View
2TM-1 x 3-79, RIL (2012)AD_ch24_Dt.08N/A18.06Gh465View
3(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch24_Dt.08N/A47.1Gh465View
4Yumian-1 x 7235, RIL (2015)AD_ch24_Dt.08N/A55.5Gh465View
5TM-1 x 3-79, RIL (2014)AD_ch24_Dt.08N/A22Gh465View
6CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch24_Dt.08N/A61.5Gh465View
7TM-1 x 3-79, RIL (2012.v3)AD_ch24_Dt.08N/A22GH465View
8TM-1 x Hai-7124, BC1 (2012)AD_ch08_At.08N/A78.8Gh465-600View
9TM-1 x Hai-7124, BC1 (2012)AD_ch24_Dt.08N/A77.2Gh465-115View
Sequence
>Gh465 ID=Gh465; Name=Gh465; organism=Gossypium hirsutum; type=genetic_marker; length=129bp
AAGTCAAAAGGAAGAGACGCTTCGCTACGAGAGAGAGAGAGAGAGAAAGA
GAGAGAGAGGAGAAGACTTGAATATGATATTAAAGGTAAGGGTAGATATA
AATTTGTGTCACTGCCAGAAGGTGAATTT