Gh429, Gh429 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	Gh429
Genbank ID	DQ908368
Type	SSR
Species	Gossypium hirsutum
Germplasm	Tamcot Sphinx
Source Sequence	DQ908368
Source Type	genomic
Repeat Motif	TCT(40
Primer 1	Gh429_F: TGGACTAACATCGGAATCACAGTG
Primer 2	Gh429_R: TTGAACATGATCGGATGCACCAGA
Publication	[view all]
Comment	Primer data obtained in 2008-01 from Hoffman, Steve M.

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	DQ908368

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
D01	chromosome	D01:62160137..62160382 +	Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1	n/a
CM018215.1	chromosome	CM018215.1:60611064..60611282 +	Gossypium barbadense (AD2) '3-79' genome HGS_v1.1	n/a
D01	chromosome	D01:59289789..59290103 +	Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1	n/a
Ghir_D01	chromosome	Ghir_D01:61005635..61005880 +	Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1	n/a
D01	chromosome	D01:59209773..59210165 +	Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1	n/a
scaffold5640	supercontig	scaffold5640:68355..68957 -	Gossypium barbadense (AD2) '3-79' genome HAU_v1	n/a
scaffold2165	supercontig	scaffold2165:93487..93606 -	Gossypium barbadense (AD2) '3-79' genome HAU_v1	n/a
Gbar_D01	chromosome	Gbar_D01:60860031..60860225 +	Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1	n/a
D01	chromosome	D01:61504365..61504583 +	Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1	n/a
CM017649.1	chromosome	CM017649.1:63291532..63291711 +	Gossypium mustelinum (AD4) genome JGI_v1.1	n/a
CM017701.1	chromosome	CM017701.1:61264032..61264268 +	Gossypium darwinii (AD5) genome HGS_v1.1	n/a
D01	chromosome	D01:62905430..62905675 +	Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1	n/a

Publications


Year	Publication
2007	Hoffman S, Yu J, Grum D, Xiao J, Kohel R, Pepper A. Identification of 700 New Microsatellite Loci from Cotton (G. hirsutum L.). Journal of cotton science. 2007; 11(4):208-241

Germplasm


Stock Name	Type
Tamcot Sphinx	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
DQ908368	DQ908368	Gossypium hirsutum	sequence_feature

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	W10 x TM-1, F2:3 (2015)	AD_ch15_Dt.01	N/A	69.2	GH429	View
2	CCRI 12-4 x (AD)5-7, F2 (2015)	AD_ch15_Dt.01	N/A	35.9	GH429	View

Sequence

>Gh429 ID=Gh429; Name=Gh429; organism=Gossypium hirsutum; type=genetic_marker; length=253bp
TGGACTAACATCGGAATCACAGTGGGTATTTCCATTTCTCTTTTTCTTCT
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTACTCTTCTTCTT
CTCCTTCCTTCTCTTCTTCTTCTTCCTCTTCTTCTTCTTCTTCTATTTAG
TTGGGAATCCTTATAAACTAATAAAAGGATCTGGTGCATCCGATCATGTT
CAA

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Gh429, Gh429 (genetic_marker) Gossypium hirsutum