Gh424, Gh424 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh424
Genbank IDDQ908363
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908363
Source Typegenomic
Repeat MotifTCC(7)
Primer 1Gh424_F: TCCAATCTCTTCGTCTGCTTCTTC
Primer 2Gh424_R: GTTTCTTCGCGGTCGAAATTTGAG
PolymorphismP_ Gh424
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908363
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:31201989..31202086 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A10chromosomeA10:57763660..57763763 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:29519233..29519342 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018211.1chromosomeCM018211.1:59778008..59778111 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:32769453..32769562 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:76386625..76386728 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:33737047..33737153 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr11chromosomeDt_chr11:28692751..28692848 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr11chromosomeAt_chr11:86839927..86840030 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr11chromosomeAt_chr11:86825732..86825835 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:29958750..29958847 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A10chromosomeA10:50662685..50662788 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:29810095..29810192 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A10chromosomeGhir_A10:63199966..63200069 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:29002962..29003059 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:64863975..64864078 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:29981679..29981776 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:62938260..62938363 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:29960601..29960698 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A10chromosomeA10:58628162..58628265 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At10chromosomeAt10:52581527..52581630 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At10chromosomeAt10:52580508..52580617 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold7973supercontigscaffold7973:435268..435377 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1070supercontigscaffold1070:76251..76354 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1070supercontigscaffold1070:75232..75341 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D10chromosomeGbar_D10:29387127..29387236 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A10chromosomeGbar_A10:60145267..60145370 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:29748151..29748263 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A10chromosomeA10:61702276..61702379 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:29459328..29459434 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017619.1chromosomeCM017619.1:60777983..60778086 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:30091843..30091940 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017645.1chromosomeCM017645.1:65895221..65895324 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:30153176..30153282 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017697.1chromosomeCM017697.1:62724001..62724104 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:30129668..30129765 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A10chromosomeA10:65952401..65952504 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:26784033..26784136 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:50841943..50842046 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:29414621..29414730 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:55915510..55915615 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:35944470..35944576 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:25697144..25697244 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:20965461..20965567 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:30278976..30279082 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:22777098..22777195 +Gossypium aridum (D4) genome ISU_v1n/a
E10chromosomeE10:62555786..62555883 -Gossypium stocksii (E1) genome NSF_v1n/a
F10chromosomeF10:41970258..41970388 +Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908363DQ908363Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch20_Dt.10N/A66.12Gh424View
2TM-1 x 3-79, RIL (2012)AD_ch20_Dt.10N/A55.14Gh424View
3TM-1 x 3-79, RIL (2014)AD_ch20_Dt.10N/A55.4Gh424View
4TM-1 x 3-79, RIL (2012.v3)AD_ch20_Dt.10N/A55.38GH424View
5TM-1 x Hai-7124, BC1 (2012)AD_ch20_Dt.10N/A54.4Gh424-115View
Sequence
>Gh424 ID=Gh424; Name=Gh424; organism=Gossypium hirsutum; type=genetic_marker; length=104bp
TCCAATCTCTTCGTCTGCTTCTTCTCCTCTTCTCCTCCTCCTCCTCCTCC
TCCTTCTTCTTCTTCTTCTTCACATAATTCCTCAAATTTCGACCGCGAAG
AAAC