Gh421, Gh421 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh421
Genbank IDDQ908360
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908360
Source Typegenomic
Repeat MotifAG(9)
Primer 1Gh421_F: TTTAAGCAAAAGGCATCTTGAAGCTG
Primer 2Gh421_R: TGTGTCTATAGATTCCATAATCCTCC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908360
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D01chromosomeD01:2229019..2229173 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A01chromosomeA01:3679587..3679739 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018215.1chromosomeCM018215.1:2473793..2473949 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018202.1chromosomeCM018202.1:2716417..2716565 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:2524872..2525026 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_01chromosomeKI_01:2430524..2430666 -Gossypioides kirkii genome ISU_v3n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:2727796..2727952 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_01chromosomeD10_01:58059949..58060104 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016614.1chromosomeCM016614.1:3670578..3670722 -Gossypium australe (G2) genome CRI_v1.1n/a
D01chromosomeD01:2189109..2189263 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A01chromosomeA01:2438137..2438289 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:2700225..2700379 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A01chromosomeGhir_A01:2991804..2991956 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:2562764..2562918 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:2862524..2862676 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:2695176..2695330 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:2994433..2994585 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:2478970..2479126 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A01chromosomeA01:2946574..2946726 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold1903supercontigscaffold1903:109067..109223 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D01chromosomeGbar_D01:2738855..2739011 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A01chromosomeGbar_A01:2705858..2706006 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:2654057..2654213 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A01chromosomeA01:2704745..2704893 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:2734240..2734392 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017610.1chromosomeCM017610.1:3223560..3223716 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:2551650..2551802 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017636.1chromosomeCM017636.1:2734191..2734343 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:2870038..2870192 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017688.1chromosomeCM017688.1:2716148..2716296 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:2698809..2698963 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A01chromosomeA01:2992069..2992221 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:2708494..2708646 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:2648001..2648157 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr01chromosomeChr01:2500475..2500629 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_01chromosomeB_01:2804542..2804696 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr02chromosomeChr02:2655926..2656078 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr02chromosomechr02:2462889..2463039 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_02chromosomeChr_02:2583121..2583277 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:2866439..2866591 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:2012769..2012919 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr02chromosomeChr02:2409076..2409232 -Gossypium lobatum (D7) genome ISU_v1n/a
F01chromosomeF01:2546215..2546371 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr02chromosomeGh421:1..399 .
Chr02:2502451..2502849 -		n/a
Chr8chromosomeGh421:1..399 .
Chr8:61806596..61806994 +		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908360DQ908360Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1W10 x TM-1, F2:3 (2015)AD_ch08_At.08N/A88.2GH421View
2CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch01_At.01N/A131.6GH421View
3901-001 x sGK156, F2 (2019)AD_ch01_At.01N/A36.29GH421View
Sequence
>Gh421 ID=Gh421; Name=Gh421; organism=Gossypium hirsutum; type=genetic_marker; length=155bp
TTTAAGCAAAAGGCATCTTGAAGCTGTTAAAAAGTAGAATTGAAAAGCAA
ACAAACAAATAAATAAATAAATAAAAAGTTAAGAGAGAGAGAGAGAGAGA
CAAATGTTGCAGGTAGAGAGAGAGAGATTGGAGGATTATGGAATCTATAG
ACACA