Gh376, Gh376 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh376
Genbank IDDQ908315
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908315
Source Typegenomic
Repeat MotifCTT(29)
Primer 1Gh376_F: GTTCGATCTCTATGGGATCTTCG
Primer 2Gh376_R: GATGTTTAAGATAACACCTCTACGG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908315
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D01chromosomeD01:44866307..44866471 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018215.1chromosomeCM018215.1:43663631..43663780 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:38639933..38640152 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr2chromosomeDt_chr2:19532590..19532754 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:41771937..41772101 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:43549853..43550014 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:45488482..45488646 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:44934066..44934230 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:42427992..42428219 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold11183supercontigscaffold11183:45491..45640 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold11183supercontigscaffold11183:39905..40054 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D01chromosomeGbar_D01:43849879..43850028 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:44650383..44650532 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017649.1chromosomeCM017649.1:45808795..45809061 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:44058858..44059007 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:45429115..45429279 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:34167149..34167355 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr_02chromosomeChr_02:29573401..29573667 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908315DQ908315Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch15_Dt.01N/A69Gh376View
20-153 x sGK9708, RIL (2016)AD_ch15_Dt.01N/A22.6Gh376View
3CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch15_Dt.01N/A76.8Gh376View
4CCRI-35 x Yumian-1, RIL (2017)AD_ch15_Dt.01N/A57.79Gh376View
Sequence
>Gh376 ID=Gh376; Name=Gh376; organism=Gossypium hirsutum; type=genetic_marker; length=171bp
GTTCGATCTCTATGGGATCTTCGTCTTCTTCTTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGAGATC
CTCTCTCTCTTCAACTCATTGCTGGAGAATAGAGTCTCTGGCTATTCCGT
AGAGGTGTTATCTTAAACATC