Gh349, Gh349 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh349
Genbank IDDQ908288
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908288
Source Typegenomic
Repeat MotifCTT(11)
Primer 1Gh349_F: GATGCACTAGGCTAATCTGAAAAGG
Primer 2Gh349_R: CATTGCTTAAGCTATACACTAGATTTTCC
PolymorphismP_ Gh349
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908288
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D11chromosomeD11:68019683..68019797 +
A11chromosomeA11:109209192..109209307 -
CM018212.1chromosomeCM018212.1:110880615..110880734 +
CM018225.1chromosomeCM018225.1:64541099..64541207 -
D5_11chromosomeD5_11:4288405..4288511 +
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:5890853..5890974 +
D10_11chromosomeD10_11:63763947..63764058 -
CM016624.1chromosomeCM016624.1:138037095..138037208 -
scaffold480.1supercontigscaffold480.1:969096..969211 -
At_chr1chromosomeAt_chr1:2642039..2642154 -
scaffold4490_D11supercontigscaffold4490_D11:148624..148739 +
A11chromosomeA11:88124129..88124244 -
Ghir_D11chromosomeGhir_D11:67553343..67553458 -
A11chromosomeA11:116511961..116512076 -
D11chromosomeD11:67454949..67455056 -
A11chromosomeA11:114348123..114348238 -
D11chromosomeD11:63681844..63681959 +
A11chromosomeA11:111079875..111079991 -
scaffold8382supercontigscaffold8382:62353..62472 +
scaffold17198supercontigscaffold17198:79027..79146 +
Gbar_D11chromosomeGbar_D11:64201413..64201519 -
Gbar_A11chromosomeGbar_A11:108102409..108102528 -
D11chromosomeD11:67004483..67004718 -
CM017633.1chromosomeCM017633.1:66354989..66355103 -
CM017646.1chromosomeCM017646.1:122552118..122552235 +
CM017659.1chromosomeCM017659.1:68397825..68397935 -
CM017711.1chromosomeCM017711.1:64079729..64079839 -
A11chromosomeA11:120143330..120143445 +
D11chromosomeD11:67446232..67446347 -
Chr11chromosomeChr11:126222010..126222132 -
Chr11chromosomeChr11:125434878..125434999 -
B_11chromosomeB_11:96513780..96513901 -
Chr07chromosomeChr07:65116913..65117017 -
chr07chromosomechr07:46627187..46627386 -
Chr_07chromosomeChr_07:45278043..45278222 -
Chr07chromosomeChr07:66474441..66474559 -
F11chromosomeF11:94751543..94751652 -
Chr11chromosomeChr11:8436509..8436622 +
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908288DQ908288Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1W10 x TM-1, F2:3 (2015)AD_ch21_Dt.11N/A23.4GH349View
2CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch11_At.11N/A150.3GH349View
3CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch13_At.13N/A76.6GH349View
Sequence
>Gh349 ID=Gh349; Name=Gh349; organism=Gossypium hirsutum; type=genetic_marker; length=116bp
GATGCACTAGGCTAATCTGAAAAGGTAAAGCTTTGAATCCTTCTTCTTCT
TCTTCTTCTTCTTCTTCTTCTTTCTTTTTTTTTTTTTGGAAAATCTAGTG
TATAGCTTAAGCAATG