Gh327, Gh327 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh327
Genbank IDDQ908266
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908266
Source Typegenomic
Repeat MotifCTT(7)
Primer 1Gh327_F: GTTTTTTCAACTTCCTCCTTCTGTTC
Primer 2Gh327_R: GTTGGATTGCAAGATTGAGAAGCC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908266
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
scaffold_382supercontigscaffold_382:70808..70953 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
KI_09chromosomeKI_09:870093..870250 -Gossypioides kirkii genome ISU_v3n/a
D10_09chromosomeD10_09:41569654..41569817 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016622.1chromosomeCM016622.1:97775546..97775709 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold559.1supercontigscaffold559.1:220769..220914 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr6chromosomeAt_chr6:5275953..5276113 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:1607742..1607887 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:1609141..1609283 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:1621042..1621187 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:1453818..1453963 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt09chromosomeDt09:1722991..1723130 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold14346supercontigscaffold14346:109796..109935 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D09chromosomeGbar_D09:1444597..1444736 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:1520123..1520262 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:1628915..1629087 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:1503521..1503705 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:1545124..1545302 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:1640127..1640272 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
B_09chromosomeB_09:1616862..1617019 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr06chromosomeChr06:1660811..1660968 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr06chromosomechr06:1349965..1350122 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_06chromosomeChr_06:1176835..1176998 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:1235741..1235898 -Gossypium aridum (D4) genome ISU_v1n/a
Chr06chromosomeChr06:929901..930058 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr06chromosomeChr06:1065964..1066097 -Gossypium lobatum (D7) genome ISU_v1n/a
E09chromosomeE09:81156140..81156297 -Gossypium stocksii (E1) genome NSF_v1n/a
Chr06chromosomeGh327:1..779 .
Chr06:1575556..1576336 -		n/a
Chr6chromosomeGh327:1..779 .
Chr6:2961214..2961994 +		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908266DQ908266Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1GX1135 x GX100-2, RIL (2016)AD_ch23_Dt.09N/A5.6Gh327View
2GX1135 x VGX100-2, RIL (2016)AD_ch23_Dt.09N/A100.4Gh327View
Sequence
>Gh327 ID=Gh327; Name=Gh327; organism=Gossypium hirsutum; type=genetic_marker; length=128bp
GTTTTTTCAACTTCCTCCTTCTGTTCATAAACTTATTCACTATTTCCACT
TTCTTCTTCGTTTTCTTCTTCTTCTTCTTCTTCTTTTTCTTCATCTTCTT
CTTTGGCTTCTCAATCTTGCAATCCAAC