Gh312, Gh312 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh312
Genbank IDDQ908252
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908252
Source Typegenomic
Repeat MotifAG(15)
Primer 1Gh312_F: CTTGTGGGAGTAATGGTGAAAGATC
Primer 2Gh312_R: CCATTTTCTGGATTGTTAAGGTAACTC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908252
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A12chromosomeA12:92698266..92698375 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:10384343..10384452 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016625.1chromosomeCM016625.1:13596387..13596488 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr3chromosomeAt_chr3:19462755..19462864 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A12chromosomeA12:78215497..78215606 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:53522345..53522440 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A12chromosomeGhir_A12:97459418..97459527 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A12chromosomeA12:97852479..97852588 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:95569944..95570053 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:92498989..92499098 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt12chromosomeDt12:54007476..54007585 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Dt12chromosomeDt12:54005578..54005687 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold3032supercontigscaffold3032:108252..108361 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold3032supercontigscaffold3032:100781..100890 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold27504supercontigscaffold27504:133868..133977 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold27504supercontigscaffold27504:131970..132079 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D12chromosomeGbar_D12:50394432..50394527 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A12chromosomeGbar_A12:92333403..92333500 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
CM017621.1chromosomeCM017621.1:92869261..92869370 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017647.1chromosomeCM017647.1:96415881..96415990 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
A12chromosomeA12:99095550..99095659 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:99821063..99821176 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:106960196..106960305 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr08chromosomeChr08:49358000..49358119 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_08chromosomeChr_08:36042218..36042480 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:27527697..27527802 -Gossypium gossypioides (D6) genome ISU_v1n/a
F12chromosomeF12:82202368..82202476 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908252DQ908252Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch12_At.12N/A102.34Gh312View
2TM-1 x 3-79, RIL (2012)AD_ch12_At.12N/A90.83Gh312View
3TM-1 x 3-79, RIL (2014)AD_ch12_At.12N/A90.8Gh312View
4Emian-22 x 3-79, BC1 (2015)AD_ch12_At.12N/A127.1Gh312View
5TM-1 x 3-79, RIL (2012.v3)AD_ch12_At.12N/A90.83GH312View
Sequence
>Gh312 ID=Gh312; Name=Gh312; organism=Gossypium hirsutum; type=genetic_marker; length=109bp
CTTGTGGGAGTAATGGTGAAAGATCAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGGACTACAATTGTTATTATGATTTTTTGGAGTTACCTTAACAATCC
AGAAAATGG