Gh304, Gh304 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	Gh304
Genbank ID	DQ908244
Type	SSR
Species	Gossypium hirsutum
Germplasm	Tamcot Sphinx
Source Sequence	DQ908244
Source Type	genomic
Repeat Motif	GA(12)
Primer 1	Gh304_F: GACCTATAGAAGCGAAGAGACTATG
Primer 2	Gh304_R: TTCTCCATTTAATCCTTATCGAATTTCC
Publication	[view all]
Comment	Primer data obtained in 2008-01 from Hoffman, Steve M.

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	DQ908244

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
D01	chromosome	D01:59564027..59564206 +	Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1	n/a
Dt_chr2	chromosome	Dt_chr2:9015971..9016150 -	Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1	n/a
D01	chromosome	D01:56811769..56811948 +	Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1	n/a
Ghir_D01	chromosome	Ghir_D01:58482467..58482646 +	Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1	n/a
D01	chromosome	D01:60100232..60100411 +	Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1	n/a
D01	chromosome	D01:59895578..59895757 +	Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1	n/a
D01	chromosome	D01:57132055..57132234 +	Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1	n/a
CM017649.1	chromosome	CM017649.1:59707117..59707288 -	Gossypium mustelinum (AD4) genome JGI_v1.1	n/a
D01	chromosome	D01:60382043..60382222 +	Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1	n/a
chr02	chromosome	chr02:42503666..42503859 -	Gossypium armourianum (D2-1) genome ISU_v1	n/a
Chr02	chromosome	Chr02:39426024..39426222 -	Gossypium lobatum (D7) genome ISU_v1	n/a

Publications


Year	Publication
2007	Hoffman S, Yu J, Grum D, Xiao J, Kohel R, Pepper A. Identification of 700 New Microsatellite Loci from Cotton (G. hirsutum L.). Journal of cotton science. 2007; 11(4):208-241

Germplasm


Stock Name	Type
Tamcot Sphinx	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
DQ908244	DQ908244	Gossypium hirsutum	sequence_feature

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Yumian-1 x 7235, RIL (2015)	AD_ch23_Dt.09	N/A	0	GH304	View
2	CCRI 12-4 x (AD)5-7, F2 (2015)	AD_ch15_Dt.01	N/A	55.2	GH304	View
3	CCRI-35 x Yumian-1, RIL (2015)	AD_ch15_Dt.01	N/A	99.8	GH304	View
4	CCRI-35 x Yumian-1, RIL (2017)	AD_ch15_Dt.01	N/A	91.58	Gh304	View

Sequence

>Gh304 ID=Gh304; Name=Gh304; organism=Gossypium hirsutum; type=genetic_marker; length=181bp
GACCTATAGAAGCGAAGAGACTATGAGAGAGGGAGGGAGAGAGAGGGAGA
GAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAAGGAAGAGGGAGAG
GGAGAGAGGAGAGAGGAAGGGAAGAGANATANAGATAGAGAGAGAGATTT
AATGGAAATTCGATAAGGATTAAATGGAGAA

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Gh304, Gh304 (genetic_marker) Gossypium hirsutum