Gh303, Gh303 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh303
Genbank IDDQ908243
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908243
Source Typegenomic
Repeat MotifCA(11)
Primer 1Gh303_F: TGAACCATCATCCTCAAATGCCTG
Primer 2Gh303_R: CAGTTGCAGAACTTGATTGATAATCCC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908243
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D13chromosomeD13:63080913..63081025 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018227.1chromosomeCM018227.1:58705515..58705630 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:57560334..57560450 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_13chromosomeD10_13:59502648..59502783 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:159063358..159063477 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr4chromosomeAt_chr4:37892660..37892772 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:58845155..58845267 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:61625369..61625481 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:62825932..62826044 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:62204612..62204724 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:58462866..58462981 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D13chromosomeGbar_D13:58626452..58626565 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:59597708..59597823 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:59667598..59667713 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:62895113..62895230 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:59366264..59366369 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:63333947..63334059 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:57535524..57535631 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_13chromosomeB_13:2569807..2569913 +Gossypium anomalum (B1) genome NSF_v1n/a
chr13chromosomechr13:43999364..43999855 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr13chromosomeChr13:61775314..61775429 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:32089526..32089635 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr13chromosomeChr13:40450021..40450220 -Gossypium lobatum (D7) genome ISU_v1n/a
E13chromosomeE13:113759530..113759644 -Gossypium stocksii (E1) genome NSF_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908243DQ908243Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch18_Dt.13N/A79.9Gh303View
2Yumian-1 x 7235, RIL (2015)AD_ch18_Dt.13N/A46.7Gh303View
3CCRI-35 x Yumian-1, RIL (2017)AD_ch18_Dt.13N/A104.7Gh303View
Sequence
>Gh303 ID=Gh303; Name=Gh303; organism=Gossypium hirsutum; type=genetic_marker; length=114bp
TGAACCATCATCCTCAAATGCCTGCACACACACACACACACACACAAAAA
AAAAACAAGAAAAAAAAGAAAGTCCCAATTAGTTAAAGGGATTATCAATC
AAGTTCTGCAACTG