Gh297, Gh297 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh297
Genbank IDDQ908237
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908237
Source Typegenomic
Repeat MotifGA(13)
Primer 1Gh297_F: AACAATGGAGAGGGAGGAGGC
Primer 2Gh297_R: CTCTTTCTTTCTCTCTCATTCCCTC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908237
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
scaffold_37supercontigscaffold_37:130878..130970 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018211.1chromosomeCM018211.1:21801872..21801960 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:32640397..32640481 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr11chromosomeAt_chr11:66661129..66661221 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Ghir_D10chromosomeGhir_D10:48030515..48030595 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A10chromosomeGhir_A10:22158761..22158853 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:21691727..21691819 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:21742345..21742437 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:22592459..22592545 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold3507supercontigscaffold3507:57355..57445 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A10chromosomeGbar_A10:22103973..22104061 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:21898963..21899051 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:22032642..22032758 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:22711286..22711376 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:22207699..22207787 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:22711311..22711403 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:98736573..98736661 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:92097652..92097736 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
F10chromosomeF10:69797899..69797991 +Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908237DQ908237Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch10_At.10N/A33.2Gh297View
2Yumian-1 x 7235, RIL (2015)AD_ch10_At.10N/A49.1Gh297View
3CCRI-35 x Yumian-1, RIL (2015)AD_ch10_At.10N/A49.9Gh297View
4CCRI-35 x Yumian-1, RIL (2017)AD_ch10_At.10N/A63.34Gh297View
Sequence
>Gh297 ID=Gh297; Name=Gh297; organism=Gossypium hirsutum; type=genetic_marker; length=91bp
AACAATGGAGAGGGAGGAGGCAGAGAGAGAGAGAGAGAGAGAGAGAGGAT
TAGGGTTTCAAAAGATGAGGGAATGAGAGAGAAAGAAAGAG