Gh246, Gh246 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh246
Genbank IDDQ908187
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908187
Source Typegenomic
Repeat MotifAG(15)
Primer 1Gh246_F: GCATCTTGTTCAGCCTTATAGGG
Primer 2Gh246_R: ACTTATCAAGTGATTTGCAGGTGAC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908187
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A11chromosomeA11:13586787..13586909 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
KI_11chromosomeKI_11:9116819..9116933 -Gossypioides kirkii genome ISU_v3n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:110560179..110560289 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016624.1chromosomeCM016624.1:17606685..17606799 -Gossypium australe (G2) genome CRI_v1.1n/a
A11chromosomeA11:13297052..13297174 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:12150961..12151069 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A11chromosomeA11:13189017..13189139 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:13387925..13388045 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:13751932..13752054 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold8619supercontigscaffold8619:35486..35594 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D11chromosomeGbar_D11:11981572..11981680 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
CM017620.1chromosomeCM017620.1:13487457..13487567 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017646.1chromosomeCM017646.1:13589452..13589572 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
A11chromosomeA11:13897369..13897491 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:14020096..14020218 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:13746706..13746816 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
F11chromosomeF11:11581479..11581589 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr07chromosomeGh246:1..583 .
Chr07:11252552..11253122 -		n/a
Chr7chromosomeGh246:1..583 .
Chr7:46836609..46837179 -		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908187DQ908187Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch11_At.11N/A51.78Gh246View
2Emian-22 x 3-79, BC1 (2011)AD_ch11_At.11N/A161.88Gh246View
3TM-1 x 3-79, RIL (2014)AD_ch11_At.11N/A52.9Gh246View
4TM-1 x 3-79, RIL (2012.v3)AD_ch11_At.11N/A53.52GH246View
Sequence
>Gh246 ID=Gh246; Name=Gh246; organism=Gossypium hirsutum; type=genetic_marker; length=121bp
GCATCTTGTTCAGCCTTATAGGGGCAAAAACATTTGTTGCCTTGACTTTG
TTTAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTAAAATCTTAAGTCA
CCTGCAAATCACTTGATAAGT