Gh229, Gh229 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	Gh229
Genbank ID	DQ908171
Type	SSR
Species	Gossypium hirsutum
Germplasm	Tamcot Sphinx
Source Sequence	DQ908171
Source Type	genomic
Repeat Motif	AGA(9)
Primer 1	Gh229_F: GACATGCCATTCATTAATTTTCATACATG
Primer 2	Gh229_R: CTGAAACAACCAGTCAAGCTCAG
Publication	[view all]
Comment	Primer data obtained in 2008-01 from Hoffman, Steve M.

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	DQ908171

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
D05	chromosome	D05:11037340..11037461 -	Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1	n/a
CM018219.1	chromosome	CM018219.1:10309580..10309707 -	Gossypium barbadense (AD2) '3-79' genome HGS_v1.1	n/a
D5_05	chromosome	D5_05:9836796..9836920 -	Gossypium raimondii (D5) 'D5-4' genome NSF_v1	n/a
D10_05	chromosome	D10_05:50626833..50626945 +	Gossypium turneri (D10) genome NSF_v1_a2	n/a
Dt_chr9	chromosome	Dt_chr9:61436100..61436221 -	Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1	n/a
D05	chromosome	D05:10309467..10309588 -	Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1	n/a
Ghir_D05	chromosome	Ghir_D05:10774416..10774537 -	Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1	n/a
D05	chromosome	D05:10489107..10489228 -	Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1	n/a
D05	chromosome	D05:10602892..10603013 -	Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1	n/a
D05	chromosome	D05:10486780..10486901 -	Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1	n/a
scaffold32471	supercontig	scaffold32471:1728..1849 +	Gossypium barbadense (AD2) '3-79' genome HAU_v1	n/a
scaffold32471	supercontig	scaffold32471:4096..4223 +	Gossypium barbadense (AD2) '3-79' genome HAU_v1	n/a
Gbar_D05	chromosome	Gbar_D05:10701304..10701425 -	Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1	n/a
D05	chromosome	D05:10740512..10740639 -	Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1	n/a
CM017627.1	chromosome	CM017627.1:10655941..10656065 -	Gossypium tomentosum (AD3) genome HGS_v1.1	n/a
CM017653.1	chromosome	CM017653.1:11044466..11044587 -	Gossypium mustelinum (AD4) genome JGI_v1.1	n/a
CM017705.1	chromosome	CM017705.1:10594814..10594941 -	Gossypium darwinii (AD5) genome HGS_v1.1	n/a
D05	chromosome	D05:10837027..10837148 -	Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1	n/a
Chr05	chromosome	Chr05:9882266..9882390 -	Gossypium raimondii (D5) 'Grai D502' genome HAU_v1	n/a
Chr09	chromosome	Chr09:10284043..10284161 -	Gossypium thurberi (D1-5) genome CRI_v1	n/a
chr09	chromosome	chr09:9293866..9293993 -	Gossypium armourianum (D2-1) genome ISU_v1	n/a
Chr_09	chromosome	Chr_09:9072820..9072935 -	Gossypium harknessii (D2-2) genome ISU_v1	n/a
Chr09	chromosome	Chr09:10540363..10540481 -	Gossypium davidsonii (D3d-8) genome CRI_v1	n/a

Publications


Year	Publication
2007	Hoffman S, Yu J, Grum D, Xiao J, Kohel R, Pepper A. Identification of 700 New Microsatellite Loci from Cotton (G. hirsutum L.). Journal of cotton science. 2007; 11(4):208-241

Germplasm


Stock Name	Type
Tamcot Sphinx	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
DQ908171	DQ908171	Gossypium hirsutum	sequence_feature

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Emian-22 x 3-79, BC1 (2011)	AD_ch19_Dt.05	N/A	165.23	Gh229	View
2	TM-1 x 3-79, RIL (2012)	AD_ch19_Dt.05	N/A	54.96	Gh229	View
3	TM-1 x 3-79, RIL (2014)	AD_ch19_Dt.05	N/A	130.4	Gh229	View
4	TM-1 x 3-79, RIL (2012.v3)	AD_ch19_Dt.05	N/A	130.38	GH229	View
5	TM-1 x Hai-7124, BC1 (2012)	AD_ch19_Dt.05	N/A	134.7	Gh229-140	View

Sequence

>Gh229 ID=Gh229; Name=Gh229; organism=Gossypium hirsutum; type=genetic_marker; length=122bp
GACATGCCATTCATTAATTTTCATACATGAAAACCACTCTTTAATGTTTA
ATTAACATCTTTAAGAAGAAGAAGAAGAAGAAGAAGAAGAATTAATAACC
TGAGCTTGACTGGTTGTTTCAG

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Gh229, Gh229 (genetic_marker) Gossypium hirsutum