Gh221, Gh221 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh221
Genbank IDDQ908163
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908163
Source Typegenomic
Repeat MotifAGA(9)
Primer 1Gh221_F: TGCTTGAAAATTGAGAAGAATTGCGAG
Primer 2Gh221_R: GCCATAGCCGCTGTAGCTGC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908163
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018205.1chromosomeCM018205.1:1584227..1584332 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:95278046..95278196 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold743.1supercontigscaffold743.1:424985..425090 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A04chromosomeA04:1455200..1455305 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A04chromosomeA04:1436933..1437038 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:1501758..1501863 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:1434546..1434651 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At04chromosomeAt04:961162..961267 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1811supercontigscaffold1811:136436..136541 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A04chromosomeGbar_A04:1634984..1635089 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A04chromosomeA04:1488339..1488444 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017613.1chromosomeCM017613.1:1663802..1663904 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017639.1chromosomeCM017639.1:1759565..1759670 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017691.1chromosomeCM017691.1:1780928..1781033 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A04chromosomeA04:1507520..1507625 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:93197580..93197712 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:97543758..97543908 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908163DQ908163Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-35 x Yumian-1, RIL (2015)AD_ch08_At.08N/A19.1Gh221View
2Yumian-1 x 7235, RIL (2015)AD_ch08_At.08N/A35.4Gh221bView
3Yumian-1 x 7235, RIL (2015)AD_ch24_Dt.08N/A52Gh221aView
4CCRI-35 x Yumian-1, RIL (2017)AD_ch08_At.08N/A90.11Gh221View
Sequence
>Gh221 ID=Gh221; Name=Gh221; organism=Gossypium hirsutum; type=genetic_marker; length=106bp
TGCTTGAAAATTGAGAAGAATTGCGAGAAAAGGAGGAAGAAGAAGAAGAA
GAAGAAGAAGAAGAGAAAACAAAGGCGATAAACAAAGCAGCTACAGCGGC
TATGGC