Gh200, Gh200 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh200
Genbank IDDQ908142
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908142
Source Typegenomic
Repeat MotifTCT(8)
Primer 1Gh200_F: TCAAGTTCTTTTTTTTAACCTCAACATTC
Primer 2Gh200_R: CTTATTAGACTAGATCTTAGTTTGATC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908142
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D04chromosomeD04:9439581..9439721 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
scaffold71.1supercontigscaffold71.1:1969545..1970447 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D04chromosomeD04:8634460..8634603 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:9272289..9272432 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:9060568..9060711 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:9172125..9172265 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:8588162..8588305 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt04chromosomeDt04:9397016..9397129 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold13935supercontigscaffold13935:139217..139293 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold14738supercontigscaffold14738:2316..2429 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D04chromosomeGbar_D04:8751322..8751435 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
CM017626.1chromosomeCM017626.1:8825547..8825663 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:9055266..9055397 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
D04chromosomeD04:9650624..9650767 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
chr03chromosomechr03:11077683..11078067 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr12chromosomeGh200:1..506 .
Chr12:8503567..8503964 -		n/a
Chr4chromosomeGh200:1..506 .
Chr4:20511216..20511613 +		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908142DQ908142Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch19_Dt.05N/A190.99Gh200View
2Emian-22 x 3-79, BC1 (2011)AD_ch22_Dt.04N/A103.7Gh200View
3TM-1 x 3-79, RIL (2014)AD_ch22_Dt.04N/A30.1Gh200View
4TM-1 x 3-79, RIL (2012.v3)AD_ch22_Dt.04N/A30.06Gh200View
Sequence
>Gh200 ID=Gh200; Name=Gh200; organism=Gossypium hirsutum; type=genetic_marker; length=144bp
TCAAGTTCTTTTTTTTAACCTCAACATTCTCTTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTTGTTAAGATCAAACTAAGATCTAGTCTAATAAG