Gh198, Gh198 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh198
Genbank IDDQ908140
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908140
Source Typegenomic
Repeat MotifCTT(10)
Primer 1Gh198_F: TCTATTTTACGATCGGGCAATACT
Primer 2Gh198_R: CAACGAGTTGAAGAAAGTGAGG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908140
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
scaffold_32supercontigscaffold_32:271353..271545 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018203.1chromosomeCM018203.1:66782286..66782466 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
scaffold2438.1supercontigscaffold2438.1:71202..71394 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold308_A02supercontigscaffold308_A02:493611..493803 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A02chromosomeGhir_A02:72756915..72757107 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
scaffold42869_obj_A02supercontigscaffold42869_obj_A02:835..1027 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A02chromosomeA02:70811262..70811454 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A02chromosomeA02:69819123..69819315 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold2566supercontigscaffold2566:416926..417106 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2566supercontigscaffold2566:412706..412886 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A02chromosomeGbar_A02:67136632..67136812 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A02chromosomeA02:68926022..68926202 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017611.1chromosomeCM017611.1:69830266..69830455 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017637.1chromosomeCM017637.1:74609794..74609980 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017689.1chromosomeCM017689.1:68520414..68520594 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A02chromosomeA02:72374136..72374328 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:46133039..46133228 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr02chromosomeChr02:62945765..62945987 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908140DQ908140Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch02_At.02N/A55.99Gh198View
2Emian-22 x 3-79, BC1 (2011)AD_ch02_At.02N/A80.02Gh198View
3TM-1 x 3-79, RIL (2014)AD_ch02_At.02N/A56.8Gh198View
4CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch02_At.02N/A104.2Gh198View
5TM-1 x 3-79, RIL (2012.v3)AD_ch02_At.02N/A56.8GH198View
6TM-1 x Hai-7124, BC1 (2012)AD_ch02_At.02N/A48.7Gh198-180View
Sequence
>Gh198 ID=Gh198; Name=Gh198; organism=Gossypium hirsutum; type=genetic_marker; length=193bp
TCTATTTTACGATCGGGCAATACTACGATTCAAAATCAACTTACGAGACA
AGATCGTATCATTCGGCTTCTGGTTCCACTGGTTTTGCCTTATCAGGGAT
TTCAACTGATTGCATTGGTTCAATCTCTGTGGGATCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCAGGATCCTCACTTTCTTCAACTCGTTG