Gh179, Gh179 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh179
Genbank IDDQ908121
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908121
Source Typegenomic
Repeat MotifGAA(10)
Primer 1Gh179_F: GGCAGAATCGCAGATTGG
Primer 2Gh179_R: CCAGTTGACTGCATTGGTTC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908121
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:24904854..24905019 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:23695012..23695171 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:21716438..21716722 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
CM016623.1chromosomeCM016623.1:65899179..65899472 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr7chromosomeDt_chr7:25853798..25853963 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:23956669..23956834 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:24372882..24373047 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D11chromosomeGhir_D11:49632257..49632393 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A06chromosomeGhir_A06:69537595..69537724 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A01chromosomeGhir_A01:11623272..11623397 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:23769517..23769682 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:58847079..58847364 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:24443693..24443858 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:59487375..59487660 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:24206544..24206713 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold6725supercontigscaffold6725:180077..180213 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10039supercontigscaffold10039:45504..45789 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10039supercontigscaffold10039:40178..40463 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold7029supercontigscaffold7029:192518..192677 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4148supercontigscaffold4148:620934..621062 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D11chromosomeGbar_D11:24003853..24004012 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D10chromosomeGbar_D10:22231270..22231398 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A06chromosomeGbar_A06:47664550..47664679 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:23880561..23880720 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:23865627..23865789 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017640.1chromosomeCM017640.1:61401610..61401895 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017650.1chromosomeCM017650.1:26067010..26067219 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:23884982..23885140 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:24780372..24780537 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:19963744..19964034 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_12chromosomeB_12:30664091..30664378 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:24182560..24182719 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr07chromosomeChr07:45997975..45998262 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr07chromosomeGh179:2..449 .
Chr07:23098144..23098579 +		n/a
Chr7chromosomeGh179:2..449 .
Chr7:26865325..26865760 +		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908121DQ908121Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch24_Dt.08N/A47.5Gh179View
2Yumian-1 x 7235, RIL (2015)AD_ch24_Dt.08N/A25.5Gh179View
3CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch11_At.11N/A177.8Gh179View
Sequence
>Gh179 ID=Gh179; Name=Gh179; organism=Gossypium hirsutum; type=genetic_marker; length=170bp
GGCAGAATCGCAGATTGGGACCTCTACTGAATAGCCGGAGACTCTGTTCT
ACAGCAACGAGTTGACAAAAACGAGGATCCTGAAGAAGAGGAAGAAGAAG
AAGAAGAAGAAGAAGAAAAAGAAAAAGAAGAAGAAGATCCCATAGAGATC
GAACCAATGCAGTCAACTGG