Gh171, Gh171 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh171
Genbank IDDQ908113
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908113
Source Typegenomic
Repeat MotifCTT(12)
Primer 1Gh171_F: CCCTAAAGAGAAATCGGTATCCTC
Primer 2Gh171_R: CAAACCCAGAACTGGCTTC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908113
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D08chromosomeD08:43692689..43692913 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D02chromosomeD02:39259747..39259973 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018222.1chromosomeCM018222.1:40517534..40517770 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018216.1chromosomeCM018216.1:36771190..36771415 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:37246988..37247214 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_04chromosomeD10_04:46697941..46698170 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr5chromosomeDt_chr5:1453065..1453291 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr4chromosomeDt_chr4:7253063..7253290 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold38966supercontigscaffold38966:542..768 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D08chromosomeD08:40133234..40133461 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:38885992..38886217 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:44130215..44130442 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:39648265..39648491 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:42930779..42931006 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:40246636..40246863 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D02chromosomeD02:37673565..37673791 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt08chromosomeDt08:40202859..40203095 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Dt02chromosomeDt02:36408953..36409178 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold3602supercontigscaffold3602:533898..534123 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1739supercontigscaffold1739:310896..311132 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D08chromosomeGbar_D08:40447813..40448045 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D02chromosomeGbar_D02:37372471..37372696 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:42300958..42301240 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D02chromosomeD02:38641027..38641252 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:54299637..54299860 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017630.1chromosomeCM017630.1:41937907..41938143 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017624.1chromosomeCM017624.1:39492876..39493102 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:43852489..43852719 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017650.1chromosomeCM017650.1:40494515..40494741 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:41108346..41108660 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017702.1chromosomeCM017702.1:38217810..38218036 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:43494748..43494975 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D02chromosomeD02:41045049..41045275 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:37631068..37631295 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr10chromosomeChr10:10771343..10771562 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:41289690..41289925 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeGh171:1..561 .
Chr05:34181197..34181750 +		n/a
Chr04chromosomeGh171:1..561 .
Chr04:37444637..37445200 -		n/a
scaffold284supercontigGh171:1..561 .
scaffold284:542585..543148 -		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908113DQ908113Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch24_Dt.08N/A34.22Gh171View
2TM-1 x 3-79, RIL (2012)AD_ch24_Dt.08N/A21.52Gh171View
3TM-1 x 3-79, RIL (2014)AD_ch24_Dt.08N/A25.5Gh171View
4CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch16_Dt.07N/A68.9Gh171View
5CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch26_Dt.12N/A120.6Gh171View
6CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch18_Dt.13N/A46.4Gh171View
7TM-1 x 3-79, RIL (2012.v3)AD_ch24_Dt.08N/A25.46GH171View
Sequence
>Gh171 ID=Gh171; Name=Gh171; organism=Gossypium hirsutum; type=genetic_marker; length=228bp
CCCTAAAGAGAAATCGGTATCCTCAAAACACCTAATTCTTACTGAGCAAC
CCCTAAAATCATGCCTTCTTTGGGTTTTTTTTTCTTTGCTTTTTCCTCAG
ATTTCTCTCCCATTTCTTAAATTTCATCGCCCCCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCTTCTTTTTATATCTTTCTTTCCTTCTTGTTTATATA
TAGAGAGCTGAAGCCAGTTCTGGGTTTG