Gh158, Gh158 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh158
Genbank IDDQ908100
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908100
Source Typegenomic
Repeat MotifAG(16)
Primer 1Gh158_F: GGTGCTCATGATGATGCTG
Primer 2Gh158_R: GAGTCAATGACAAGAGGATCACC
PolymorphismP_ Gh158
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908100
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D09chromosomeD09:39055457..39055655 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A09chromosomeA09:66246141..66246343 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018223.1chromosomeCM018223.1:37006888..37007098 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018210.1chromosomeCM018210.1:61956061..61956259 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:30848894..30849082 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_09chromosomeKI_09:28768951..28769137 +Gossypioides kirkii genome ISU_v3n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:68668963..68669205 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_09chromosomeD10_09:12551207..12551398 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016622.1chromosomeCM016622.1:20424984..20425174 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr6chromosomeAt_chr6:49317541..49317743 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr6chromosomeDt_chr6:12812643..12812841 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold239982supercontigscaffold239982:6..204 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D09chromosomeD09:37075506..37075704 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A09chromosomeA09:61410361..61410559 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:39098612..39098810 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A09chromosomeGhir_A09:66085446..66085648 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:38839249..38839447 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:67921015..67921217 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:38855638..38855833 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:67839243..67839443 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:36934859..36935079 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A09chromosomeA09:64733826..64734028 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold8361supercontigscaffold8361:177982..178192 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold3791supercontigscaffold3791:994677..994875 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold3791supercontigscaffold3791:993048..993246 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D09chromosomeGbar_D09:37699157..37699365 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A09chromosomeGbar_A09:62408643..62408839 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:40231611..40231817 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A09chromosomeA09:63871162..63871360 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:37903827..37904035 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017618.1chromosomeCM017618.1:63637095..63637297 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:39296992..39297208 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017644.1chromosomeCM017644.1:66572545..66572735 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:38505562..38505798 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017696.1chromosomeCM017696.1:63796459..63796657 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:40519051..40519249 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A09chromosomeA09:69157941..69158143 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:67862552..67862790 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:71152488..71152730 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr09chromosomeChr09:37076995..37077183 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_09chromosomeB_09:55288929..55289111 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr06chromosomeChr06:37517515..37517701 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr06chromosomechr06:30604018..30604365 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_06chromosomeChr_06:25801948..25802138 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:38942792..38942982 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:28277624..28277910 +Gossypium aridum (D4) genome ISU_v1n/a
Chr06chromosomeChr06:21090004..21090190 +Gossypium gossypioides (D6) genome ISU_v1n/a
E09chromosomeE09:17651635..17651829 -Gossypium stocksii (E1) genome NSF_v1n/a
F09chromosomeF09:56529575..56529779 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr09chromosomeChr09:111894287..111894469 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr06chromosomeGh158:1..570 .
Chr06:38256238..38256798 +		n/a
Chr6chromosomeGh158:1..570 .
Chr6:29023986..29024546 +		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908100DQ908100Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x 7235, RIL (2015)AD_ch23_Dt.09N/A63GH158View
2GX1135 x GX100-2, F2 (2013)AD_ch09_At.09N/A55.3GH158View
3GX1135 x GX100-2, RIL (2015)AD_ch09_At.09N/A149.8GH158View
4GX1135 x GX100-2, RIL (2016)AD_ch09_At.09N/A149.8GH158View
Sequence
>Gh158 ID=Gh158; Name=Gh158; organism=Gossypium hirsutum; type=genetic_marker; length=199bp
GGTGCTCATGATGATGCTGATGGTTGTGGGGTTTGCTTAGAATACAGGGA
AGAAAGGGGAGAGAAAGAGAGTTGGTTGATGGGTCTAAGTAGACAACGGT
TTGGAAGGGGACTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTAAA
GATAATGATACAGGAAGAAAAGGGAGGGTGATCCTCTTGTCATTGACTC