Gh156, Gh156 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh156
Genbank IDDQ908098
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908098
Source Typegenomic
Repeat MotifTC(10)
Primer 1Gh156_F: GATCTTGACAGGGAAGACAGACA
Primer 2Gh156_R: CATAACTTGACATCCATCCATGA
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908098
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D04chromosomeD04:47634506..47634696 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A04chromosomeA04:72528824..72529010 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018218.1chromosomeCM018218.1:45729600..45729792 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018205.1chromosomeCM018205.1:71125115..71125290 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_04chromosomeD5_04:8340447..8340635 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:10467037..10467240 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_04chromosomeD10_04:44578576..44578758 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016617.1chromosomeCM016617.1:113705829..113706062 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr12chromosomeDt_chr12:29549626..29549816 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr12chromosomeAt_chr12:50485027..50485213 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D04chromosomeD04:42652024..42652214 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A04chromosomeA04:53657363..53657549 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:47505989..47506179 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A04chromosomeGhir_A04:74649622..74649808 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:48476460..48476650 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:77613976..77614162 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:47399432..47399622 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:74785059..74785245 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:45388296..45388486 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A04chromosomeA04:70420657..70420843 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold7922supercontigscaffold7922:69840..70015 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold18225supercontigscaffold18225:105620..105812 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold18225supercontigscaffold18225:103556..103748 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D04chromosomeGbar_D04:43821024..43821216 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A04chromosomeGbar_A04:71477757..71477932 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D04chromosomeD04:48899278..48899470 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A04chromosomeA04:72067259..72067434 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:46046774..46046964 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017613.1chromosomeCM017613.1:73512985..73513177 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:48906500..48906690 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017639.1chromosomeCM017639.1:81675944..81676140 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017704.1chromosomeCM017704.1:45994877..45995069 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017691.1chromosomeCM017691.1:71822869..71823044 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:49194355..49194545 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A04chromosomeA04:78419275..78419461 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:98072550..98072748 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:99986573..99986780 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr04chromosomeChr04:8293392..8293580 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_02chromosomeB_02:10602962..10603162 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr12chromosomeChr12:45620986..45621166 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr12chromosomechr12:22553978..22554160 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_12chromosomeChr_12:18198295..18198475 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr12chromosomeChr12:45286399..45286580 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr12chromosomeChr12:21380734..21380918 +Gossypium aridum (D4) genome ISU_v1n/a
Chr12chromosomeChr12:16436681..16436863 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr12chromosomeChr12:20116130..20116316 +Gossypium lobatum (D7) genome ISU_v1n/a
E04chromosomeE04:92730260..92730448 +Gossypium stocksii (E1) genome NSF_v1n/a
F04chromosomeF04:81964788..81964978 +Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908098DQ908098Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
10-153 x sGK9708, RIL (2016)AD_ch04_At.04N/A67.6Gh156View
2CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch04_At.04N/A67.5Gh156View
Sequence
>Gh156 ID=Gh156; Name=Gh156; organism=Gossypium hirsutum; type=genetic_marker; length=191bp
GATCTTGACAGGGAAGACAGACAAACCTGTTTCTTTTCTCTCTCCCTCTC
ACTCTCTCTCTCTCTCTCTCTCGGGATTGGGACTTGTAAACAATAATATT
TACTTATATCCTCATGATATATATTGGGAATATATTATATCATGCATGCA
ACACATGCATACATGCATTCATGGATGGATGTCAAGTTATG