Gh156, Gh156 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh156
Genbank IDDQ908098
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908098
Source Typegenomic
Repeat MotifTC(10)
Primer 1Gh156_F: GATCTTGACAGGGAAGACAGACA
Primer 2Gh156_R: CATAACTTGACATCCATCCATGA
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908098
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D04chromosomeD04:47634506..47634696 +
A04chromosomeA04:72528824..72529010 +
CM018218.1chromosomeCM018218.1:45729600..45729792 +
CM018205.1chromosomeCM018205.1:71125115..71125290 +
D5_04chromosomeD5_04:8340447..8340635 -
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:10467037..10467240 -
D10_04chromosomeD10_04:44578576..44578758 +
CM016617.1chromosomeCM016617.1:113705829..113706062 +
Dt_chr12chromosomeDt_chr12:29549626..29549816 +
At_chr12chromosomeAt_chr12:50485027..50485213 +
D04chromosomeD04:42652024..42652214 +
A04chromosomeA04:53657363..53657549 +
Ghir_D04chromosomeGhir_D04:47505989..47506179 +
Ghir_A04chromosomeGhir_A04:74649622..74649808 +
D04chromosomeD04:48476460..48476650 +
A04chromosomeA04:77613976..77614162 +
D04chromosomeD04:47399432..47399622 +
A04chromosomeA04:74785059..74785245 +
D04chromosomeD04:45388296..45388486 +
A04chromosomeA04:70420657..70420843 +
scaffold7922supercontigscaffold7922:69840..70015 -
scaffold18225supercontigscaffold18225:105620..105812 -
scaffold18225supercontigscaffold18225:103556..103748 -
Gbar_D04chromosomeGbar_D04:43821024..43821216 +
Gbar_A04chromosomeGbar_A04:71477757..71477932 +
D04chromosomeD04:48899278..48899470 +
A04chromosomeA04:72067259..72067434 +
CM017626.1chromosomeCM017626.1:46046774..46046964 +
CM017613.1chromosomeCM017613.1:73512985..73513177 +
CM017652.1chromosomeCM017652.1:48906500..48906690 +
CM017639.1chromosomeCM017639.1:81675944..81676140 +
CM017704.1chromosomeCM017704.1:45994877..45995069 +
CM017691.1chromosomeCM017691.1:71822869..71823044 +
D04chromosomeD04:49194355..49194545 +
A04chromosomeA04:78419275..78419461 +
Chr04chromosomeChr04:98072550..98072748 +
Chr04chromosomeChr04:99986573..99986780 +
Chr04chromosomeChr04:8293392..8293580 -
B_02chromosomeB_02:10602962..10603162 -
Chr12chromosomeChr12:45620986..45621166 +
chr12chromosomechr12:22553978..22554160 +
Chr_12chromosomeChr_12:18198295..18198475 +
Chr12chromosomeChr12:45286399..45286580 +
Chr12chromosomeChr12:21380734..21380918 +
Chr12chromosomeChr12:16436681..16436863 +
Chr12chromosomeChr12:20116130..20116316 +
E04chromosomeE04:92730260..92730448 +
F04chromosomeF04:81964788..81964978 +
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908098DQ908098Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
10-153 x sGK9708, RIL (2016)AD_ch04_At.04N/A67.6Gh156View
2CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch04_At.04N/A67.5Gh156View
Sequence
>Gh156 ID=Gh156; Name=Gh156; organism=Gossypium hirsutum; type=genetic_marker; length=191bp
GATCTTGACAGGGAAGACAGACAAACCTGTTTCTTTTCTCTCTCCCTCTC
ACTCTCTCTCTCTCTCTCTCTCGGGATTGGGACTTGTAAACAATAATATT
TACTTATATCCTCATGATATATATTGGGAATATATTATATCATGCATGCA
ACACATGCATACATGCATTCATGGATGGATGTCAAGTTATG