Gh151, Gh151 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh151
Genbank IDDQ908093
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908093
Source Typegenomic
Repeat MotifA(12)
Primer 1Gh151_F: CAACCAGGATGTAGACGTGA
Primer 2Gh151_R: CATTTGAACCCACGTTATCCTG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908093
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D07chromosomeD07:6542929..6543101 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018221.1chromosomeCM018221.1:6161834..6162007 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:6148350..6148521 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D07chromosomeD07:6066230..6066402 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:6416415..6416587 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:6143702..6143874 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:6367117..6367289 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:6220245..6220418 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold14295supercontigscaffold14295:48584..48757 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D07chromosomeGbar_D07:6433739..6433912 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:6331244..6331417 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:6590797..6590972 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:6529782..6529958 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:6458834..6459007 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:6498656..6498828 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:47430156..47430328 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr01chromosomeChr01:6300807..6300987 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908093DQ908093Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x 7235, RIL (2015)AD_ch16_Dt.07N/A54Gh151View
2CCRI-35 x Yumian-1, RIL (2015)AD_ch16_Dt.07N/A69.2Gh151View
3CCRI-35 x Yumian-1, RIL (2017)AD_ch16_Dt.07N/A39.82Gh151View
Sequence
>Gh151 ID=Gh151; Name=Gh151; organism=Gossypium hirsutum; type=genetic_marker; length=175bp
CAACCAGGATGTAGACGTGAATTTTGGTCCTAATAATTATTTCCGGTTTA
ATGAAAATGACAACAACAAAAAATCATAATTTATTTAAGCTTCTTCAAAA
AAAAAAAAGCTGATTGAGTTTTAGTTTGTTTGACATGAGTATTGTTGTCA
ATACAGGATAACGTGGGTTCAAATG