Gh147, Gh147 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh147
Genbank IDDQ908089
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908089
Source Typegenomic
Repeat MotifTCT(9)
Primer 1Gh147_F: GTGTTGCGACCCAAAGTTTAC
Primer 2Gh147_R: TCAACCTCAATAACAGGCACC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908089
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:17575750..17575889 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A11chromosomeA11:20195762..20195907 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:16540349..16540488 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018212.1chromosomeCM018212.1:19597121..19597263 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:49572580..49572710 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_11chromosomeKI_11:12449293..12449447 +Gossypioides kirkii genome ISU_v3n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:103365122..103365273 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_11chromosomeD10_11:15981277..15981416 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016624.1chromosomeCM016624.1:26298705..26298844 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr7chromosomeDt_chr7:14406618..14406757 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr7chromosomeAt_chr7:2044338..2044483 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:16878498..16878637 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A11chromosomeA11:19915135..19915280 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:17130851..17130990 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:20352857..20353002 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:16710639..16710778 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:19669656..19669801 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:17139509..17139648 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:20074646..20074791 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:16922859..16922998 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A11chromosomeA11:20498735..20498880 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold6871supercontigscaffold6871:31498..31637 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold668supercontigscaffold668:284234..284376 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D11chromosomeGbar_D11:16826427..16826566 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:19373314..19373456 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:16731766..16731905 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A11chromosomeA11:19592204..19592346 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:16617999..16618138 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017620.1chromosomeCM017620.1:20029876..20030021 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:17058479..17058618 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017646.1chromosomeCM017646.1:20132236..20132381 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:16759704..16759843 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017698.1chromosomeCM017698.1:19855936..19856102 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:17498563..17498702 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A11chromosomeA11:20668927..20669072 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:21013056..21013207 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:20906418..20906569 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr11chromosomeChr11:47491222..47491352 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_11chromosomeB_11:19171826..19171959 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:16814905..16815032 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr07chromosomechr07:13795423..13795559 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_07chromosomeChr_07:14222298..14222437 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:16633586..16633722 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:12850077..12850215 +Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:11339305..11339441 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr07chromosomeChr07:13321152..13321290 +Gossypium lobatum (D7) genome ISU_v1n/a
E11chromosomeE11:21707579..21707730 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr07chromosomeGh147:1..622 .
Chr07:16113985..16114591 +		n/a
Chr7chromosomeGh147:1..622 .
Chr7:36506981..36507587 +		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908089DQ908089Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch21_Dt.11N/A106.1Gh147View
2CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch11_At.11N/A114.1Gh147View
Sequence
>Gh147 ID=Gh147; Name=Gh147; organism=Gossypium hirsutum; type=genetic_marker; length=146bp
GTGTTGCGACCCAAAGTTTACATCATCGACAGCTCCAGTTTCAAAAGCCT
TGTTCAGGAGCTCACTGGCAATTCCACTGTTTCATCACCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTGAGAAAATGGTGCCTGTTATTGAGGTTGA