Gh146, Gh146 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	Gh146
Genbank ID	DQ908088
Type	SSR
Species	Gossypium hirsutum
Germplasm	Tamcot Sphinx
Source Sequence	DQ908088
Source Type	genomic
Repeat Motif	CA(10)
Primer 1	Gh146_F: GACCAGCACCGGAGTTTC
Primer 2	Gh146_R: CTACTTGCCTAGGTATTGAGGTG
Publication	[view all]
Comment	Primer data obtained in 2008-01 from Hoffman, Steve M.

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	DQ908088

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
D08	chromosome	D08:38418526..38418737 +	Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1	n/a
CM018222.1	chromosome	CM018222.1:36749303..36749522 +	Gossypium barbadense (AD2) '3-79' genome HGS_v1.1	n/a
Dt_chr4	chromosome	Dt_chr4:15018786..15018995 -	Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1	n/a
D08	chromosome	D08:35860421..35860632 +	Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1	n/a
Ghir_D08	chromosome	Ghir_D08:38767642..38767853 +	Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1	n/a
D08	chromosome	D08:39857492..39857703 +	Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1	n/a
D08	chromosome	D08:38512843..38513052 +	Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1	n/a
D08	chromosome	D08:36530409..36530618 +	Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1	n/a
CM017630.1	chromosome	CM017630.1:37672681..37672892 +	Gossypium tomentosum (AD3) genome HGS_v1.1	n/a
CM017656.1	chromosome	CM017656.1:39254456..39254661 +	Gossypium mustelinum (AD4) genome JGI_v1.1	n/a
CM017708.1	chromosome	CM017708.1:36843650..36843859 +	Gossypium darwinii (AD5) genome HGS_v1.1	n/a
D08	chromosome	D08:39049472..39049683 +	Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1	n/a
Chr04	chromosome	Chr04:37173981..37174180 +	Gossypium davidsonii (D3d-8) genome CRI_v1	n/a
Chr04	chromosome	Gh146:1..620 . Chr04:33321942..33322553 +		n/a
Chr4	chromosome	Gh146:1..620 . Chr4:9283385..9283996 +		n/a

Publications


Year	Publication
2007	Hoffman S, Yu J, Grum D, Xiao J, Kohel R, Pepper A. Identification of 700 New Microsatellite Loci from Cotton (G. hirsutum L.). Journal of cotton science. 2007; 11(4):208-241

Germplasm


Stock Name	Type
Tamcot Sphinx	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
DQ908088	DQ908088	Gossypium hirsutum	sequence_feature

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Emian-22 x 3-79, BC1 (2011)	AD_ch24_Dt.08	N/A	3.41	Gh146	View
2	TM-1 x 3-79, RIL (2012)	AD_ch07_At.07	N/A	83.85	Gh146	View
3	Yumian-1 x 7235, RIL (2015)	AD_ch24_Dt.08	N/A	11	Gh146	View
4	TM-1 x 3-79, RIL (2014)	AD_ch07_At.07	N/A	54.7	Gh146	View
5	TM-1 x 3-79, RIL (2012.v3)	AD_ch07_At.07	N/A	54.7	GH146	View

Sequence

>Gh146 ID=Gh146; Name=Gh146; organism=Gossypium hirsutum; type=genetic_marker; length=210bp
GACCAGCACCGGAGTTTCAGACATTTTATTTTTGTAAAACATTTCCAAAA
CACAAATCATTTCAAATTGCTGTGGTATAGTTTCTCAAAATTTTTTCTAA
AACGAACACACACACACACACACACAGAGTTAAGTAAAAACATAGGCAGA
GTTTTTACAAACCTAGCTTTAATACCACTAAATGTAACACCTCAATACCT
AGGCAAGTAG

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Gh146, Gh146 (genetic_marker) Gossypium hirsutum