Gh137, Gh137 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh137
Genbank IDDQ908079
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908079
Source Typegenomic
Repeat MotifTCT(9)
Primer 1Gh137_F: TTCCATTGAAACATCATGTCTTTAC
Primer 2Gh137_R: GACTTAAACCCAACAGCGAAGAC
PolymorphismP_ Gh137
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908079
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D07chromosomeD07:45060867..45061057 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018221.1chromosomeCM018221.1:43704756..43704946 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:39877709..39877890 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_07chromosomeD10_07:12972959..12973145 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr1chromosomeDt_chr1:74847873..74848063 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:42445502..42445692 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:49194435..49194617 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D07chromosomeGhir_D07:46713783..46713973 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A12chromosomeGhir_A12:91321941..91322123 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:46043385..46043575 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:46058967..46059157 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:42571541..42571734 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt12chromosomeDt12:48783217..48783399 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Dt12chromosomeDt12:48776900..48777082 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Dt07chromosomeDt07:46676573..46676763 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold8815supercontigscaffold8815:140225..140415 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold7557supercontigscaffold7557:191853..192035 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold7557supercontigscaffold7557:185536..185718 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold21787supercontigscaffold21787:104315..104497 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D12chromosomeGbar_D12:46036122..46036304 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D07chromosomeGbar_D07:44183096..44183286 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A12chromosomeGbar_A12:86404999..86405181 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:44898996..44899186 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:44184796..44184992 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:45129691..45129881 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:44654262..44654461 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:46581418..46581608 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:12194859..12195040 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr08chromosomeChr08:45150624..45150809 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr01chromosomeChr01:43358248..43358453 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr01chromosomechr01:32705267..32705451 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_01chromosomeChr_01:28743311..28743500 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:43087283..43087518 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:29407169..29407350 +Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:23944552..23944736 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:28865096..28865441 +Gossypium lobatum (D7) genome ISU_v1n/a
Chr01chromosomeGh137:1..795 .
Chr01:39705918..39706703 +		n/a
Chr8chromosomeGh137:1..795 .
Chr8:27095216..27096001 -		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908079DQ908079Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1GX1135 x GX100-2, RIL (2016)AD_ch16_Dt.07N/A26.4Gh137View
Sequence
>Gh137 ID=Gh137; Name=Gh137; organism=Gossypium hirsutum; type=genetic_marker; length=191bp
TTCCATTGAAACATCATGTCTTTACTCTTCTTCTTCTTCTTCTTCTTCTT
CTTGACTCTCTTCTTCTGTAACCTTCCACCATTATTGTCCCAGCAAGATC
GATCCTTCAATTTCTCGAATTTCCCATGGACTCCATCTCAAAACAAATTT
CTTATTTCTTCAAACAAAGTCTTCGCTGTTGGGTTTAAGTC