Gh133, Gh133 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh133
Genbank IDDQ908075
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908075
Source Typegenomic
Repeat MotifTG(11)
Primer 1Gh133_F: TGTTTCTCTCGGAAACTATAGACCA
Primer 2Gh133_R: CCAACTTAAGAAGGAAGAGATACCA
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908075
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D12chromosomeD12:36280580..36280781 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018226.1chromosomeCM018226.1:33853921..33854122 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:25415345..25415550 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_12chromosomeD10_12:29265616..29265821 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr8chromosomeDt_chr8:19270410..19270611 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:32893557..32893758 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:36272074..36272275 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A13chromosomeGhir_A13:19815233..19815393 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:35533838..35534039 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:36200767..36200968 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:33992724..33992925 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold8617supercontigscaffold8617:75658..75859 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D12chromosomeGbar_D12:33109079..33109280 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:34423299..34423500 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:34322190..34322389 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:36377397..36377638 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:34951248..34951449 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:36237460..36237661 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:32334603..32334808 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
chr08chromosomechr08:25191595..25191800 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_08chromosomeChr_08:23108012..23108217 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:33858748..33858947 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:22857317..22857510 +Gossypium aridum (D4) genome ISU_v1n/a
Chr08chromosomeChr08:17909095..17909291 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr08chromosomeChr08:21932293..21932602 +Gossypium lobatum (D7) genome ISU_v1n/a
Chr12chromosomeChr12:53002511..53002710 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908075DQ908075Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch21_Dt.11N/A204.65Gh133View
2TM-1 x 3-79, RIL (2012)AD_ch13_At.13N/A63.63Gh133View
3TM-1 x 3-79, RIL (2014)AD_ch13_At.13N/A59.8Gh133View
4Emian-22 x 3-79, BC1 (2015)AD_ch21_Dt.11N/A191.3Gh133View
5CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch13_At.13N/A100.2Gh133View
6TM-1 x 3-79, RIL (2012.v3)AD_ch13_At.13N/A59.76GH133View
Sequence
>Gh133 ID=Gh133; Name=Gh133; organism=Gossypium hirsutum; type=genetic_marker; length=202bp
TGTTTCTCTCGGAAACTATAGACCATTAATAAGGAAAATTATGAATCATT
TAATACTTGTTAAGTTCCACTAGGTAGGTTGGGTCATATGTGTGTGTGTG
TGTGTGTGTGATAGGTTCTAAAAGAGATTCTTCTTCTTTCTTGCATGCTA
CTCTCTGATTCTTTTTCTTAAATCAAATGGTATCTCTTCCTTCTTAAGTT
GG