Gh129, Gh129 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh129
Genbank IDDQ908071
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908071
Source Typegenomic
Repeat MotifCA(9)
Primer 1Gh129_F: ACACAAGCGATCAACAAGG
Primer 2Gh129_R: GAAATGATGTGAGCTCTTGTTTC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908071
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A03chromosomeA03:87225299..87225414 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018204.1chromosomeCM018204.1:85950742..85950877 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
At_chr5chromosomeAt_chr5:35124982..35125097 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr8chromosomeAt_chr8:57929508..57929623 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:80178565..80178680 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A03chromosomeGhir_A03:91877164..91877279 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:91079316..91079431 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:88948870..88948985 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:84277801..84277916 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold9172supercontigscaffold9172:45557..45690 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold9172supercontigscaffold9172:42563..42698 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A03chromosomeGbar_A03:85299191..85299326 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:87417008..87417147 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:87055556..87055671 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017638.1chromosomeCM017638.1:93302406..93302532 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:87347861..87347990 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:92432040..92432155 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:21974498..21974640 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
B_03chromosomeB_03:19659903..19660015 -Gossypium anomalum (B1) genome NSF_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908071DQ908071Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch03_At.03N/A97.84Gh129View
2TM-1 x 3-79, RIL (2012)AD_ch03_At.03N/A53.19Gh129View
3TM-1 x 3-79, RIL (2014)AD_ch03_At.03N/A63.2Gh129View
4CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch03_At.03N/A91.9Gh129View
5CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch24_Dt.08N/A126.1Gh129View
6TM-1 x 3-79, RIL (2012.v3)AD_ch03_At.03N/A63.18GH129View
Sequence
>Gh129 ID=Gh129; Name=Gh129; organism=Gossypium hirsutum; type=genetic_marker; length=116bp
ACACAAGCGATCAACAAGGGTTCTTAATCCAACATCTTTATACATTACCA
AATCACACACACACACACACATATATTTACAAACCATAAAAATGAAACAA
GAGCTCACATCATTTC