Gh125, Gh125 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh125
Genbank IDDQ908067
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908067
Source Typegenomic
Repeat MotifAG(9)
Primer 1Gh125_F: AGATCAGAAGACGGTCGAATC
Primer 2Gh125_R: AGCGATTGGGTGAATGG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908067
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A11chromosomeA11:259879..260009 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018212.1chromosomeCM018212.1:291204..291338 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:124243152..124243282 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
A11chromosomeA11:295076..295206 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:291199..291316 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:264644..264774 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A11chromosomeA11:230747..230877 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:133140..133272 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:270062..270192 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt11chromosomeDt11:313314..313431 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At11chromosomeAt11:304110..304244 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10433supercontigscaffold10433:86336..86453 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10193supercontigscaffold10193:93565..93699 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Scaffold2309supercontigScaffold2309:17157..17291 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Scaffold1558supercontigScaffold1558:66042..66170 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D11chromosomeGbar_D11:205568..205685 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A11chromosomeA11:282059..282191 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017620.1chromosomeCM017620.1:290075..290203 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017646.1chromosomeCM017646.1:269399..269531 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017698.1chromosomeCM017698.1:254017..254149 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A11chromosomeA11:268978..269108 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:315677..315809 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:277556..277688 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_11chromosomeB_11:332664..332797 -Gossypium anomalum (B1) genome NSF_v1n/a
E11chromosomeE11:255248..255378 -Gossypium stocksii (E1) genome NSF_v1n/a
F11chromosomeF11:211718..211850 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908067DQ908067Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch11_At.11N/A0Gh125View
Sequence
>Gh125 ID=Gh125; Name=Gh125; organism=Gossypium hirsutum; type=genetic_marker; length=131bp
AGATCAGAAGACGGTCGAATCGAGATATCCATTCCAGAGACTGAAAGAGA
AACAGAGATAGAGATACAGAGAGAGAGAGAGAGAGGTGCTTCATTCTTGC
CACGGTTACATTTGCCATTCACCCAATCGCT