Gh124, Gh124 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh124
Genbank IDDQ908066
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908066
Source Typegenomic
Repeat MotifTCT(11)
Primer 1Gh124_F: CGTTGGATAACATGCCATGT
Primer 2Gh124_R: GCAATTCTAATTCTGTCGATTACC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908066
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A04chromosomeA04:11603349..11603536 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018205.1chromosomeCM018205.1:11587888..11588069 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:84271318..84271546 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr12chromosomeAt_chr12:783023..783210 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr12chromosomeAt_chr12:39345717..39345904 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A04chromosomeA04:11297449..11297636 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A04chromosomeGhir_A04:12736350..12736537 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A04chromosomeA04:11969290..11969477 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:11316957..11317144 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:11075047..11075234 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold9341supercontigscaffold9341:93694..93875 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A04chromosomeGbar_A04:11640882..11641063 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A04chromosomeA04:11303350..11303531 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017613.1chromosomeCM017613.1:12567336..12567547 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017639.1chromosomeCM017639.1:13569561..13569763 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017691.1chromosomeCM017691.1:11397584..11397768 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A04chromosomeA04:12796432..12796619 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:79914581..79914830 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:84079370..84079600 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:21068226..21068419 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908066DQ908066Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch04_At.04N/A41.4Gh124View
2Emian-22 x 3-79, BC1 (2011)AD_ch04_At.04N/A89.78Gh124View
3TM-1 x 3-79, RIL (2014)AD_ch04_At.04N/A41.5Gh124View
4TM-1 x 3-79, RIL (2012.v3)AD_ch04_At.04N/A41.46GH124View
5TM-1 x Hai-7124, BC1 (2012)AD_ch04_At.04N/A71.6Gh124-255View
Sequence
>Gh124 ID=Gh124; Name=Gh124; organism=Gossypium hirsutum; type=genetic_marker; length=188bp
CGTTGGATAACATGCCATGTCATCCATGACTGTTCAGTTATTGATGTTTG
TTTGACTATCTGTTATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTG
TTTGCAATTAGGCTGAGTTGCACATTGAGCTTTATAGCTCACCCCTTTTC
ATTTTACCATTTTAGGTAATCGACAGAATTAGAATTGC