Gh117, Gh117 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	Gh117
Genbank ID	DQ908059
Type	SSR
Species	Gossypium hirsutum
Germplasm	Tamcot Sphinx
Source Sequence	DQ908059
Source Type	genomic
Repeat Motif	AGA(15)
Primer 1	Gh117_F: CGACTGAAGGTTTGGCAGTAGTC
Primer 2	Gh117_R: GATGGCCGACATTACTCAGAG
Publication	[view all]
Comment	Primer data obtained in 2008-01 from Hoffman, Steve M.

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	DQ908059

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
A04	chromosome	A04:77339566..77339819 -	Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1	n/a
CM018205.1	chromosome	CM018205.1:75880500..75880729 -	Gossypium barbadense (AD2) '3-79' genome HGS_v1.1	n/a
A04	chromosome	A04:58531624..58531877 -	Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1	n/a
Ghir_D04	chromosome	Ghir_D04:51076444..51076644 -	Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1	n/a
Ghir_A04	chromosome	Ghir_A04:79531948..79532201 -	Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1	n/a
A04	chromosome	A04:82302747..82303000 -	Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1	n/a
A04	chromosome	A04:79655585..79655838 -	Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1	n/a
A04	chromosome	A04:75295632..75295885 -	Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1	n/a
Gbar_A04	chromosome	Gbar_A04:76337250..76337476 -	Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1	n/a
A04	chromosome	A04:76793570..76793796 -	Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1	n/a
CM017613.1	chromosome	CM017613.1:78177619..78177884 -	Gossypium tomentosum (AD3) genome HGS_v1.1	n/a
CM017691.1	chromosome	CM017691.1:76606398..76606653 -	Gossypium darwinii (AD5) genome HGS_v1.1	n/a
A04	chromosome	A04:83280927..83281177 -	Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1	n/a
Chr04	chromosome	Chr04:103318883..103319127 -	Gossypium herbaceum (A1) 'Mutema' genome WHU_v1	n/a

Publications


Year	Publication
2007	Hoffman S, Yu J, Grum D, Xiao J, Kohel R, Pepper A. Identification of 700 New Microsatellite Loci from Cotton (G. hirsutum L.). Journal of cotton science. 2007; 11(4):208-241

Germplasm


Stock Name	Type
Tamcot Sphinx	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
DQ908059	DQ908059	Gossypium hirsutum	sequence_feature

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	TM-1 x 3-79, RIL (2012)	AD_ch04_At.04	N/A	64.39	Gh117	View
2	Emian-22 x 3-79, BC1 (2011)	AD_ch04_At.04	N/A	68.14	Gh117	View
3	TM-1 x 3-79, RIL (2014)	AD_ch04_At.04	N/A	68.8	Gh117	View
4	CCRI 12-4 x (AD)5-7, F2 (2015)	AD_ch04_At.04	N/A	81.3	Gh117	View
5	TM-1 x 3-79, RIL (2012.v3)	AD_ch04_At.04	N/A	65.46	GH117	View
6	TM-1 x Hai-7124, BC1 (2012)	AD_ch04_At.04	N/A	58.9	Gh117-230	View

Sequence

>Gh117 ID=Gh117; Name=Gh117; organism=Gossypium hirsutum; type=genetic_marker; length=254bp
CGACTGAAGGTTTGGCAGTAGTCTAATTACTCACTTTTTTTTTCTTTGAC
CATCTCAACATAGACTAACAAAGAGAAGAAGAAGAAGAAGAAGAAGAAGA
AGAAGAAGAAGAAGAAGAAATGAGAGAAGTGAAGAAATGAGTTTGAATGG
GAGAAGAAATAAGAAATAAGTTTGAATGGGAGAAGAAATAAGTTTCTTTG
AATGAGAAGAAAGAGAATAAAGGTGCATACTAGCTCTGAGTAATGTCGGC
CATC

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Gh117, Gh117 (genetic_marker) Gossypium hirsutum