Gh107, Gh107 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh107
Genbank IDDQ908049
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908049
Source Typegenomic
Repeat MotifCA(10)
Primer 1Gh107_F: CATATGTGACTTAACATTCATCGTC
Primer 2Gh107_R: CTCACCCATGTTTGTTCGA
PolymorphismP_ Gh107
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908049
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A04chromosomeA04:18637521..18637769 +
CM018205.1chromosomeCM018205.1:28692380..28692626 +
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:55072420..55072670 -
At_chr12chromosomeAt_chr12:29979532..29979780 -
scaffold831_A04supercontigscaffold831_A04:649465..649713 -
Ghir_A10chromosomeGhir_A10:63206470..63206698 +
Ghir_A08chromosomeGhir_A08:29772412..29772642 +
Ghir_A04chromosomeGhir_A04:30591041..30591289 +
A04chromosomeA04:30222209..30222457 +
A04chromosomeA04:29416698..29416946 +
A04chromosomeA04:28531022..28531270 +
At10chromosomeAt10:52590082..52590310 +
At06chromosomeAt06:54458443..54458667 +
scaffold10833supercontigscaffold10833:138531..138777 +
scaffold10833supercontigscaffold10833:137012..137258 +
scaffold1070supercontigscaffold1070:84806..85034 +
scaffold23258supercontigscaffold23258:1996..2224 -
Gbar_D06chromosomeGbar_D06:26722856..26723079 +
Gbar_D04chromosomeGbar_D04:26607147..26607370 +
Gbar_A10chromosomeGbar_A10:60151759..60151987 +
Gbar_A04chromosomeGbar_A04:28357989..28358235 +
Gbar_A08chromosomeGbar_A08:29433245..29433473 -
A04chromosomeA04:28520666..28520912 +
CM017613.1chromosomeCM017613.1:29992844..29993096 +
CM017639.1chromosomeCM017639.1:33717523..33717783 +
CM017691.1chromosomeCM017691.1:28490604..28490850 +
A04chromosomeA04:31451183..31451431 +
Chr04chromosomeChr04:52680140..52680392 +
Chr04chromosomeChr04:53604238..53604486 +
F04chromosomeF04:41491768..41492006 +
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908049DQ908049Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch04_At.04N/A39.67Gh107View
2Emian-22 x 3-79, BC1 (2011)AD_ch04_At.04N/A104.17Gh107View
3TM-1 x 3-79, RIL (2014)AD_ch04_At.04N/A40.5Gh107View
4TM-1 x 3-79, RIL (2012.v3)AD_ch04_At.04N/A40.55GH107View
Sequence
>Gh107 ID=Gh107; Name=Gh107; organism=Gossypium hirsutum; type=genetic_marker; length=249bp
CATATGTGACTTAACATTCATCGTCATCATAATATCATCACTGTTACACA
ATTTACTTTAGACAAATTAACATACATATTTAGGCTACACGAACTTTTCG
ATTATCTTACTCAAACAATTGCACACACACACACACACACATATATATAT
ACATTCAATAAACTTTGAGTAAGTTTACTTATCACATTCACTTAATCAAA
TAAGTTAGGCACATAACATCATATGGATTATCGAACAAACATGGGTGAG