Gh100, Gh100 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh100
Genbank IDDQ908042
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908042
Source Typegenomic
Repeat MotifTA(8)
Primer 1Gh100_F: CTTTCTTCATCCAGGTTTCTGA
Primer 2Gh100_R: CGTTTCAATGATAAACATGACG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908042
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D06chromosomeD06:14044755..14044922 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018220.1chromosomeCM018220.1:13023447..13023612 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D10_06chromosomeD10_06:48553773..48553955 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr10chromosomeDt_chr10:17632156..17632323 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:13223272..13223439 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A06chromosomeGhir_A06:8027950..8028117 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D06chromosomeGhir_D06:13780885..13781052 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:13359976..13360143 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:13765307..13765474 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:13281829..13281996 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold2322supercontigscaffold2322:249380..249545 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold3418supercontigscaffold3418:18470..18619 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A06chromosomeGbar_A06:7777357..7777506 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D06chromosomeGbar_D06:13175689..13175854 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:12945638..12945803 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:13659016..13659183 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:13377562..13377729 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:13227527..13227692 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:13948403..13948570 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:13392313..13392478 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr10chromosomeChr10:12931653..12931818 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:9406161..9406323 -Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:8176248..8176402 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr10chromosomeChr10:9898968..9899133 -Gossypium lobatum (D7) genome ISU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908042DQ908042Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch06_At.06N/A43.21Gh100bView
2Emian-22 x 3-79, BC1 (2011)AD_ch25_Dt.06N/A90.23Gh100aView
3Emian-22 x 3-79, BC1 (2015)AD_ch25_Dt.06N/A62.9Gh100aView
4TM-1 x 3-79, RIL (2012)AD_ch06_At.06N/A83.5GH100View
5TM-1 x 3-79, RIL (2014)AD_ch06_At.06N/A83.5GH100View
6CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch06_At.06N/A82.9GH100View
7TM-1 x 3-79, RIL (2012.v3)AD_ch06_At.06N/A83.5GH100View
Sequence
>Gh100 ID=Gh100; Name=Gh100; organism=Gossypium hirsutum; type=genetic_marker; length=168bp
CTTTCTTCATCCAGGTTTCTGAAAAAAAATCCCATAAAAAAATCAATCAC
AAACCAAATAAACAACCCCTCTCTCTCTTTCTCTCTCTCTGTGTGTGTGT
ATATATATATATATATCAAGAAATGAAACCTAATCATGATTGGGGTCGTC
ATGTTTATCATTGAAACG