Gh098, Gh098 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh098
AliasGh98
Genbank IDDQ908040
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908040
Source Typegenomic
Repeat MotifAGA(4)
Primer 1Gh098_F: CACCGCATCACCCAAATAGTAG
Primer 2Gh098_R: TCTTCCATATCTTCCTCTTCTCC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908040
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A09chromosomeA09:10763656..10763776 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018210.1chromosomeCM018210.1:12686086..12686215 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:14163214..14163349 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr6chromosomeAt_chr6:16807326..16807446 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold9117supercontigscaffold9117:1397..1517 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A09chromosomeGhir_A09:13684666..13684786 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A09chromosomeA09:13243449..13243569 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:13616615..13616735 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:13861123..13861243 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At09chromosomeAt09:14229800..14229929 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1588supercontigscaffold1588:82668..82797 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A09chromosomeGbar_A09:13017392..13017521 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A09chromosomeA09:13342541..13342670 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017618.1chromosomeCM017618.1:13401361..13401490 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017644.1chromosomeCM017644.1:12904458..12904593 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017696.1chromosomeCM017696.1:13458311..13458440 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A09chromosomeA09:13859768..13859888 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:13763107..13763250 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:15041008..15041143 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908040DQ908040Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch09_At.09N/A38.78Gh098View
2TM-1 x 3-79, RIL (2012)AD_ch09_At.09N/A118.21Gh098View
3TM-1 x 3-79, RIL (2014)AD_ch09_At.09N/A23Gh098View
4CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch09_At.09N/A40.9GH98View
5TM-1 x 3-79, RIL (2012.v3)AD_ch09_At.09N/A23.03GH098View
Sequence
>Gh098 ID=Gh098; Name=Gh098; organism=Gossypium hirsutum; type=genetic_marker; length=121bp
CACCGCATCACCCAAATAGTAGTTTGAGAAGGAAGGAAAGTTGAAGAAGA
AGAAGAAAAAGAAAGAAAAAAAGAAAGAAGGAAAAAGAAGATGGAGAAGG
AGAAGAGGAAGATATGGAAGA