Gh088, Gh088 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh088
AliasGh88
Genbank IDDQ908030
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908030
Source Typegenomic
Repeat MotifCA(9)
Primer 1Gh088_F: GCATGTGAGGCACTTTACAGA
Primer 2Gh088_R: CATGATGAAGATTAACTAAAATGGG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908030
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D13chromosomeD13:169798..169935 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018227.1chromosomeCM018227.1:211539..211674 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:116331..116458 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_13chromosomeD10_13:137373..137504 -Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold1263.1supercontigscaffold1263.1:388910..389047 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:131829..131966 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Scaffold921supercontigScaffold921:12435..12559 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D13chromosomeGhir_D13:129036..129178 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:134381..134518 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:136013..136150 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:149268..149403 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt13chromosomeDt13:135646..135781 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold21633supercontigscaffold21633:13386..13521 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold17543supercontigscaffold17543:188174..188299 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Scaffold1048supercontigScaffold1048:40518..40653 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A13chromosomeGbar_A13:137214..137339 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:406936..407071 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:128099..128234 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:197005..197138 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:132736..132871 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:176051..176188 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:112433..112557 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr13chromosomeChr13:128097..128226 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr13chromosomechr13:115658..115787 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_13chromosomeChr_13:115336..115623 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:143362..143481 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:82215..82344 -Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:99832..99953 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr13chromosomeChr13:83144..83273 -Gossypium lobatum (D7) genome ISU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908030DQ908030Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_chUN/A0Gh088View
2Yumian-1 x 7235, RIL (2015)AD_ch18_Dt.13N/A0.3Gh088View
3CCRI-35 x Yumian-1, RIL (2015)AD_ch13_At.13N/A26.7Gh088View
4CCRI-35 x Yumian-1, RIL (2017)AD_ch13_At.13N/A0Gh088View
Sequence
>Gh088 ID=Gh088; Name=Gh088; organism=Gossypium hirsutum; type=genetic_marker; length=136bp
GCATGTGAGGCACTTTACAGAAAGGAAAAACACACACACACACACACACA
CTAATCAATACATAGAGATTGCATTTATTTTTTCTCATACTTTATTGAAG
ACTAATAATTCCCCATTTTAGTTAATCTTCATCATG