Gh082, Gh082 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh082
AliasGh82
Genbank IDDQ908024
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908024
Source Typegenomic
Repeat MotifAG(21)
Primer 1Gh082_F: GATACCTTTGTCACGAAGCTG
Primer 2Gh082_R: GCACCAATCAGTAAGTGCAAGTC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908024
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A06chromosomeA06:28368048..28368209 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018207.1chromosomeCM018207.1:26751101..26751238 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:28989668..28989819 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr12chromosomeAt_chr12:28832959..28833120 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold1307_A06supercontigscaffold1307_A06:18223..18384 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A06chromosomeGhir_A06:28339556..28339717 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A06chromosomeA06:27472507..27472668 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:27978218..27978379 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:27514427..27514588 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold17357supercontigscaffold17357:9748..9883 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A06chromosomeGbar_A06:26576568..26576705 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A06chromosomeA06:26677095..26677232 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017615.1chromosomeCM017615.1:27653224..27653377 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017641.1chromosomeCM017641.1:28550328..28550469 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017693.1chromosomeCM017693.1:27220328..27220469 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A06chromosomeA06:28374751..28374912 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:29135635..29135782 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:30157387..30157540 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908024DQ908024Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch06_At.06N/A70.18Gh082bView
2TM-1 x 3-79, RIL (2012)AD_ch06_At.06N/A67.24GH082View
3TM-1 x 3-79, RIL (2014)AD_ch06_At.06N/A67.2GH082View
4CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch06_At.06N/A85.9GH82View
5TM-1 x 3-79, RIL (2012.v3)AD_ch06_At.06N/A67.24GH082View
6TM-1 x Hai-7124, BC1 (2012)AD_ch06_At.06N/A68.3Gh82-150View
Sequence
>Gh082 ID=Gh082; Name=Gh082; organism=Gossypium hirsutum; type=genetic_marker; length=162bp
GATACCTTTGTCACGAAGCTGAATCGAAAGAAGAAATTGATAAAAACAAG
AGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATCAAA
GGAAGAAGAGAGTAAAATTTCTTCTCAAATTTAATAATTGACTTGCACTT
ACTGATTGGTGC