Gh073, Gh073 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh073
AliasGh73
Genbank IDDQ908015
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908015
Source Typegenomic
Repeat MotifTCT(16)
Primer 1Gh073_F: GCTGACTGCATTGGTTCG
Primer 2Gh073_R: TGGGTCCTCTACCTAATAGCTGG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908015
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D07chromosomeD07:38509170..38509315 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018221.1chromosomeCM018221.1:37353415..37353548 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D10_03chromosomeD10_03:41266435..41266593 -Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_02chromosomeD10_02:17589565..17589712 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr1chromosomeDt_chr1:70669742..70669890 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:37071019..37071167 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D11chromosomeD11:45870640..45870843 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:37825407..37825555 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D06chromosomeGhir_D06:18181670..18181787 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D03chromosomeGhir_D03:17834062..17834185 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D02chromosomeGhir_D02:33653649..33653758 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:37710883..37711031 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:50438327..50438509 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:38092723..38092871 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:37210751..37210899 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D11chromosomeD11:48117242..48117427 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt01chromosomeDt01:41538256..41538371 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4584supercontigscaffold4584:248738..248861 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2712supercontigscaffold2712:193967..194097 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1652supercontigscaffold1652:120374..120489 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D07chromosomeGbar_D07:37446664..37446797 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D01chromosomeGbar_D01:43542962..43543077 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D03chromosomeGbar_D03:17533980..17534103 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A01chromosomeGbar_A01:41459654..41459787 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:38400571..38400704 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D11chromosomeD11:51212774..51212971 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:37835628..37835761 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:51550394..51550563 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017636.1chromosomeCM017636.1:45085151..45085365 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:37971164..37971297 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017711.1chromosomeCM017711.1:48113742..48113917 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:38526132..38526280 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D11chromosomeD11:50721634..50721810 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908015DQ908015Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch16_Dt.07N/A39.95Gh073View
2TM-1 x 3-79, RIL (2012)AD_ch19_Dt.05N/A26.15Gh073View
3TM-1 x 3-79, RIL (2014)AD_ch19_Dt.05N/A155.3Gh073View
4TM-1 x 3-79, RIL (2012.v3)AD_ch19_Dt.05N/A155.25GH073View
Sequence
>Gh073 ID=Gh073; Name=Gh073; organism=Gossypium hirsutum; type=genetic_marker; length=146bp
GCTGACTGCATTGGTTCGATCTCTATGAGATCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGAGATCCTCGCTCTCTTCAA
CTCGTTGCTAGAGAATAGAATCTCCAGCTATTAGGTAGAGGACCCA