Gh067, Gh067 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh067
AliasGh67
Genbank IDDQ908009
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908009
Source Typegenomic
Repeat MotifAG(12)
Primer 1Gh067_F: CAAGAGGGAAATCGACAAGG
Primer 2Gh067_R: CCCCTTCACCTATTAAGTCAACA
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D02chromosomeD02:28118364..28118530 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018216.1chromosomeCM018216.1:25921252..25921424 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Dt_chr5chromosomeDt_chr5:58926563..58926729 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:27386399..27386565 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:23286044..23286200 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D02chromosomeGhir_D02:26739643..26739809 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:26986923..26987089 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:26852405..26852571 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:26857890..26858056 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold4263supercontigscaffold4263:89332..89504 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold13793supercontigscaffold13793:163681..163799 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D07chromosomeGbar_D07:41668341..41668459 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D02chromosomeGbar_D02:26345735..26345907 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:26368083..26368255 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:26756368..26756533 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:27853333..27853503 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:26122262..26122434 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:27553859..27554025 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:24663751..24663910 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr01chromosomeChr01:42767022..42767334 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:35768357..35768631 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908009DQ908009Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch14_Dt.02N/A76.89Gh067View
2Emian-22 x 3-79, BC1 (2011)AD_ch14_Dt.02N/A42.13Gh067View
3TM-1 x 3-79, RIL (2014)AD_ch14_Dt.02N/A49.5Gh067View
4TM-1 x 3-79, RIL (2012.v3)AD_ch14_Dt.02N/A49.53GH067View
Sequence
>Gh067 ID=Gh067; Name=Gh067; organism=Gossypium hirsutum; type=genetic_marker; length=167bp
CAAGAGGGAAATCGACAAGGAAAATGGACATAAAAAAAGAGAAAAACAAA
GGAGAGAAAGTGAGTGAAACAGAGAGAGAGTGTGTGTGTGAGTGAGTGAG
TGAGAGAGAGGAGAGAGAGAGAGAGAGATGTGAGAATGAAGGTGTGTTGA
CTTAATAGGTGAAGGGG