Gh059, Gh059 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh059
AliasGh59
Genbank IDDQ908001
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908001
Source Typegenomic
Repeat MotifAG(12)
Primer 1Gh059_F: CTGCTAAGGCTAACAAGTAAGTATTGG
Primer 2Gh059_R: CTTTCCTCAATTTTCCCTCC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908001
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:48140323..48140482 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
scaffold_37supercontigscaffold_37:130845..131016 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:45987210..45987350 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018211.1chromosomeCM018211.1:21801839..21802006 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:18896499..18896660 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:32640364..32640527 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016623.1chromosomeCM016623.1:109443010..109443166 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr11chromosomeDt_chr11:52636827..52636986 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr11chromosomeAt_chr11:66661083..66661254 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:45523743..45523902 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold2473_A10supercontigscaffold2473_A10:1059633..1059792 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:48030469..48030628 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A10chromosomeGhir_A10:22158728..22158899 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:48264310..48264469 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:21691694..21691865 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:47157555..47157714 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:21742312..21742483 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:45360711..45360870 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A10chromosomeA10:22592426..22592591 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt10chromosomeDt10:47657572..47657712 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Dt10chromosomeDt10:47653317..47653457 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold3576supercontigscaffold3576:357031..357171 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold3576supercontigscaffold3576:352776..352916 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold3507supercontigscaffold3507:57309..57478 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold3507supercontigscaffold3507:56284..56424 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D10chromosomeGbar_D10:45720043..45720183 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A10chromosomeGbar_A10:22103927..22104094 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:46995614..46995754 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A10chromosomeA10:21898930..21899097 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:45752486..45752632 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017619.1chromosomeCM017619.1:22032609..22032804 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:47727355..47727514 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017645.1chromosomeCM017645.1:22711253..22711422 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:47041730..47041876 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017697.1chromosomeCM017697.1:22207666..22207833 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:48108184..48108343 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A10chromosomeA10:22711278..22711449 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:98736527..98736694 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:92097606..92097769 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:43437930..43438091 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr11chromosomeChr11:44907008..44907167 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:36851803..36851958 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:29923469..29923626 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:46192064..46192221 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:24908660..24908817 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:32135613..32135753 +Gossypium lobatum (D7) genome ISU_v1n/a
E10chromosomeE10:31264259..31264416 -Gossypium stocksii (E1) genome NSF_v1n/a
F10chromosomeF10:69797857..69798024 +Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908001DQ908001Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch10_At.10N/A34Gh059View
2Yumian-1 x 7235, RIL (2015)AD_ch10_At.10N/A49.1Gh059View
3CCRI-35 x Yumian-1, RIL (2015)AD_ch10_At.10N/A46.2Gh059View
4CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch20_Dt.10N/A79.6GH59View
5CCRI-35 x Yumian-1, RIL (2017)AD_ch10_At.10N/A61.56Gh059View
Sequence
>Gh059 ID=Gh059; Name=Gh059; organism=Gossypium hirsutum; type=genetic_marker; length=170bp
CTGCTAAGGCTAACAAGTAAGTATTGGTAGAGTGGAAATAAGAACAAACA
AAGGAGAGGGAGGAGGCAGAGAGAGAGAGAGAGAGAGAGAGAGGATTAGG
GTTTCAAAAGATGAGGGAATGAGAGAGAAAGAAAGAGGGGCAGAATTTTT
GGAGGGAAAATTGAGGAAAG