Gh049, Gh049 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh049
AliasGh49
Genbank IDDQ907991
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ907991
Source Typegenomic
Repeat MotifGT(8)
Primer 1Gh049_F: GGATCTTGTGTAGACATTGGATG
Primer 2Gh049_R: GATTATGCTAAGAAAACCAGTGCC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ907991
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D01chromosomeD01:59455519..59455670 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A01chromosomeA01:97053158..97053305 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018215.1chromosomeCM018215.1:58114159..58114310 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018202.1chromosomeCM018202.1:106227440..106227587 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:51621812..51621965 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:92264506..92264653 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016614.1chromosomeCM016614.1:128956939..128957084 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr2chromosomeDt_chr2:9122071..9122222 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr8chromosomeAt_chr8:22514040..22514187 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:56706418..56706569 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A01chromosomeA01:93100134..93100281 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:58374060..58374211 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A01chromosomeGhir_A01:110624572..110624719 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:60003303..60003454 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:111285012..111285159 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:59787073..59787224 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:108920317..108920464 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:57023530..57023681 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A01chromosomeA01:105692929..105693076 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt01chromosomeDt01:57539407..57539558 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold9106supercontigscaffold9106:277995..278146 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4352supercontigscaffold4352:189642..189789 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D01chromosomeGbar_D01:58336782..58336933 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A01chromosomeGbar_A01:108668953..108669100 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:58989567..58989718 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A01chromosomeA01:108600698..108600845 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:59090144..59090295 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017610.1chromosomeCM017610.1:107256988..107257133 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:59812486..59812637 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017636.1chromosomeCM017636.1:114684283..114684430 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:57896800..57896951 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017688.1chromosomeCM017688.1:104758965..104759110 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:60273527..60273678 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A01chromosomeA01:112476353..112476500 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:115857848..115857995 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr02chromosomeChr02:7089983..7090130 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr01chromosomeChr01:47013259..47013412 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_01chromosomeB_01:91305847..91305990 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr02chromosomeChr02:55711833..55711986 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr02chromosomechr02:42592958..42593111 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr02chromosomeChr02:56606759..56606912 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:40994653..40994806 -Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:39508622..39508775 -Gossypium lobatum (D7) genome ISU_v1n/a
E01chromosomeE01:108993922..108994067 -Gossypium stocksii (E1) genome NSF_v1n/a
F01chromosomeF01:92718266..92718417 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr01chromosomeChr01:11061794..11061939 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr02chromosomeGh049:1..543 .
Chr02:57407456..57408016 -		n/a
Chr9chromosomeGh049:1..543 .
Chr9:10648531..10649091 -		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ907991DQ907991Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch15_Dt.01N/A82.4Gh049View
2Yumian-1 x 7235, RIL (2015)AD_ch15_Dt.01N/A100.3Gh049View
3CCRI-35 x Yumian-1, RIL (2015)AD_ch15_Dt.01N/A93.5Gh049View
4CCRI-35 x Yumian-1, RIL (2017)AD_ch15_Dt.01N/A90.13Gh049View
Sequence
>Gh049 ID=Gh049; Name=Gh049; organism=Gossypium hirsutum; type=genetic_marker; length=148bp
GGATCTTGTGTAGACATTGGATGAAGTTAAGGGTGGTTGCAGCTGATCAG
TGAAAGGAAGTTCTCATGAAAATATTATCGATGTGTGTGTGTGTGTGTTT
CATACTTGTTTCAACACAGTTTATGGCACTGGTTTTCTTAGCATAATC