Gh024, Gh024 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh024
AliasGh24
Genbank IDDQ907970
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ907970
Source Typegenomic
Repeat MotifTTG(3)
Primer 1Gh024_F: CATTTAATCAGTGGATGATTCAACCTTC
Primer 2Gh024_R: CTATTTTGATCGTCCCTCTCAATTCAG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ907970
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A13chromosomeA13:85637765..85637830 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018214.1chromosomeCM018214.1:89911140..89911205 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:103752526..103752591 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_13chromosomeD10_13:45192044..45192109 +Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr13chromosomeAt_chr13:14524535..14524600 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A13chromosomeA13:62242056..62242121 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A13chromosomeGhir_A13:89317295..89317360 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A13chromosomeA13:92255405..92255470 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:90368210..90368275 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:89040519..89040584 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold6134supercontigscaffold6134:55453..55518 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A13chromosomeGbar_A13:91219552..91219617 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A13chromosomeA13:94164425..94164490 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017622.1chromosomeCM017622.1:91711606..91711671 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017648.1chromosomeCM017648.1:96616274..96616339 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017700.1chromosomeCM017700.1:92026531..92026596 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A13chromosomeA13:92630500..92630565 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:97497593..97497658 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:101766241..101766306 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_13chromosomeB_13:21409737..21409802 +Gossypium anomalum (B1) genome NSF_v1n/a
B_13chromosomeB_13:73372252..73372489 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr_13chromosomeChr_13:30646565..30646630 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:29933190..29933255 +Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:29235928..29235992 +Gossypium lobatum (D7) genome ISU_v1n/a
F13chromosomeF13:77890696..77890761 +Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ907970DQ907970Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch14_Dt.02N/A65.2Gh024View
Sequence
>Gh024 ID=Gh024; Name=Gh024; organism=Gossypium hirsutum; type=genetic_marker; length=66bp
CATTTAATCAGTGGATGATTCAACCTTCTATTGTTGTTGCTGAATTGAGA
GGGACGATCAAAATAG