Gh023, Gh023 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh023
AliasGh23
Genbank IDDQ907969
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ907969
Source Typegenomic
Repeat MotifAT(4)
Primer 1Gh023_F: CCTCGGATCAACGCACTC
Primer 2Gh023_R: GTATTTTCTCATCTAACACTAAGGTTGTGC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ907969
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:49380108..49380163 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:47321000..47321055 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D10_07chromosomeD10_07:31380392..31380447 +Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_11chromosomeD10_11:46291128..46291183 -Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_11chromosomeD10_11:47777074..47777129 -Gossypium turneri (D10) genome NSF_v1_a2n/a
D11chromosomeD11:44858607..44858662 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:49867217..49867272 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:49462529..49462584 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:49810686..49810741 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:47107376..47107431 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt11chromosomeDt11:48313380..48313435 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold6725supercontigscaffold6725:420833..420888 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D11chromosomeGbar_D11:47081435..47081490 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:50216718..50216773 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017659.1chromosomeCM017659.1:50517472..50517527 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:47089704..47089759 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:49694175..49694230 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
B_03chromosomeB_03:22799609..22799664 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr05chromosomeChr05:26178903..26178958 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr07chromosomechr07:33098276..33098331 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_07chromosomeChr_07:31620135..31620190 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:47494098..47494153 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:25184483..25184538 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr07chromosomeGh023:1..522 .
Chr07:40024057..40024582 -		n/a
scaffold160supercontigGh023:1..522 .
scaffold160:703100..703625 +		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ907969DQ907969Gossypium hirsutumsequence_feature


Sequence
>Gh023 ID=Gh023; Name=Gh023; organism=Gossypium hirsutum; type=genetic_marker; length=56bp
CCTCGGATCAACGCACTCATATATATGCACAACCTTAGTGTTAGATGAGA
AAATAC