Gh019, Gh019 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh019
AliasGh19
Genbank IDDQ907966
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ907966
Source Typegenomic
Repeat MotifA(8)
Primer 1Gh019_F: CTATCCAGCAATGATAAGGCTAGG
Primer 2Gh019_R: CAAGTCCTACTCTTTGGAAAAATTCTG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ907966
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D08chromosomeD08:59651852..59651915 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018222.1chromosomeCM018222.1:56133235..56133298 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:52433892..52433954 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
scaffold544.1supercontigscaffold544.1:668065..668128 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:56224808..56224871 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:58874451..58874514 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:59588959..59589022 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:58753746..58753809 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:56026023..56026086 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt08chromosomeDt08:58592212..58592275 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold17042supercontigscaffold17042:15292..15355 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D08chromosomeGbar_D08:56169627..56169690 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:58096356..58096419 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:57631262..57631325 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:59838363..59838426 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:56549188..56549251 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:59442549..59442612 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:53319423..53319485 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_08chromosomeB_08:92601777..92601840 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr04chromosomeChr04:30254449..30254512 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr04chromosomeGh019:1..472 .
Chr04:52999737..53000207 -		n/a
Chr7chromosomeGh019:1..472 .
Chr7:30905837..30906307 -		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ907966DQ907966Gossypium hirsutumsequence_feature


Sequence
>Gh019 ID=Gh019; Name=Gh019; organism=Gossypium hirsutum; type=genetic_marker; length=64bp
CTATCCAGCAATGATAAGGCTAGGATAAAAAAAATAACAGAATTTTTCCA
AAGAGTAGGACTTG