Gh011, Gh011 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh011
AliasGh11
Gh011=Gh014
Gh014
Genbank IDDQ907958
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ907958
Source Typegenomic
Repeat MotifT(9)
Primer 1Gh011_F: CCTACCTTTACTTCAGCCTGGAG
Primer 2Gh011_R: GCTACTGGATTGGGAAAGGC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ907958
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A08chromosomeA08:32392353..32392407 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018209.1chromosomeCM018209.1:34432942..34432996 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:18766746..18766801 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:36759843..36759898 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr4chromosomeAt_chr4:28978895..28978949 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A08chromosomeA08:28810386..28810440 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A08chromosomeGhir_A08:36409571..36409625 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A08chromosomeA08:36681436..36681490 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:36841871..36841925 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:40278429..40278483 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold7111supercontigscaffold7111:274140..274194 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A08chromosomeGbar_A08:35807271..35807325 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A08chromosomeA08:34839982..34840036 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017617.1chromosomeCM017617.1:35424503..35424557 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017643.1chromosomeCM017643.1:38227185..38227238 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017695.1chromosomeCM017695.1:35100960..35101014 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A08chromosomeA08:37763835..37763889 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:39208990..39209046 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:17874374..17874429 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
chr01chromosomechr01:27342491..27342547 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ907958DQ907958Gossypium hirsutumsequence_feature


Sequence
>Gh011 ID=Gh011; Name=Gh011; organism=Gossypium hirsutum; type=genetic_marker; length=55bp
CCTACCTTTACTTCAGCCTGGAGTTTTTTTTTATTGCCTTTCCCAATCCA
GTAGC