Gh003, Gh003 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh003
AliasGh3
Genbank IDDQ907950
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ907950
Source Typegenomic
Repeat MotifCAA(3)
Primer 1Gh003_F: CTCAACCTCCCACATGGC
Primer 2Gh003_R: GCTGCTCACAAGAGGGATG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ907950
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A01chromosomeA01:46188640..46188693 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018202.1chromosomeCM018202.1:43541656..43541709 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:111635894..111635947 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:51128974..51129027 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr4chromosomeAt_chr4:55531878..55531931 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr2chromosomeAt_chr2:41793548..41793601 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A01chromosomeA01:44136696..44136749 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:46584102..46584155 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:46009728..46009781 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:45751527..45751580 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:44998039..44998092 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold9487supercontigscaffold9487:13248..13301 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A01chromosomeGbar_A01:44118625..44118678 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:44260827..44260880 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:46056886..46056939 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:47890295..47890348 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:44125218..44125271 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:47373521..47373574 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:24250022..24250075 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:53182494..53182547 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:23818625..23818678 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr01chromosomeChr01:50729615..50729668 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
F07chromosomeF07:26107667..26107720 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ907950DQ907950Gossypium hirsutumsequence_feature


Sequence
>Gh003 ID=Gh003; Name=Gh003; organism=Gossypium hirsutum; type=genetic_marker; length=54bp
CTCAACCTCCCACATGGCACAACAACAAAAATAATCATCCCTCTTGTGAG
CAGC