Gh001, Gh001 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh001
AliasGh1
Genbank IDDQ907948
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ907948
Source Typegenomic
Repeat MotifCATG(3)
Primer 1Gh001_F: GCATGCTATCAATTGGGTTTGCATG
Primer 2Gh001_R: TTGGATTTCCGTTAGCTTCTTGAGC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ907948
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D07chromosomeD07:38217357..38217478 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018221.1chromosomeCM018221.1:37126355..37126476 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:34853591..34853711 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr1chromosomeDt_chr1:70901341..70901462 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:36847496..36847617 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:37593151..37593272 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:37441787..37441908 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:37860266..37860387 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:36978249..36978370 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold3709supercontigscaffold3709:141096..141217 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D07chromosomeGbar_D07:37219549..37219670 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:38176277..38176398 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:37612698..37612819 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:38401846..38401967 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:37753043..37753164 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:38293638..38293759 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:17406027..17406147 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ907948DQ907948Gossypium hirsutumsequence_feature


Sequence
>Gh001 ID=Gh001; Name=Gh001; organism=Gossypium hirsutum; type=genetic_marker; length=122bp
GCATGCTATCAATTGGGTTTGCATGTTATTGATTCATGCATGCATGTCAA
ATTTCAATTATTTGATGATCTGATAGATATATTTTTCTTTGTTTTTAGCT
CAAGAAGCTAACGGAAATCCAA