Gh037, Gh037 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh037
AliasGh37
Genbank IDDQ907981
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ907981
Source Typegenomic
Repeat MotifTG(14)
Primer 1Gh037_F: CAAATTCTGTATATGCATNTATACATCTGTTC
Primer 2Gh037_R: GACATCATCCAATGCGAGC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ907981
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:1856758..1856842 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:1649676..1649756 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:1549311..1549393 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
CM016626.1chromosomeCM016626.1:2796938..2797024 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr9chromosomeDt_chr9:69891837..69891921 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:1699381..1699465 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:1832439..1832521 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:1688153..1688237 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:1741045..1741129 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:1746807..1746891 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold17766supercontigscaffold17766:310409..310489 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D05chromosomeGbar_D05:1697065..1697143 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:1785548..1785612 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:1814072..1814152 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:1708738..1708820 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:1685822..1685902 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
D05chromosomeD05:1739745..1739829 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:1553346..1553428 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
chr09chromosomechr09:1502598..1502682 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr09chromosomeChr09:1711151..1711235 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:1179729..1179809 +Gossypium gossypioides (D6) genome ISU_v1n/a
E05chromosomeE05:2138780..2138886 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr13chromosomeChr13:197259668..197259760 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ907981DQ907981Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch19_Dt.05N/A11.49GH037View
2Yumian-1 x 7235, RIL (2015)AD_ch19_Dt.05N/A76.8GH037View
3TM-1 x 3-79, RIL (2014)AD_ch19_Dt.05N/A173.5GH037View
4TM-1 x 3-79, RIL (2012.v3)AD_ch19_Dt.05N/A173.53GH037View
5TM-1 x Hai-7124, BC1 (2012)AD_ch19_Dt.05N/A179.3Gh37-80View
Sequence
>Gh037 ID=Gh037; Name=Gh037; organism=Gossypium hirsutum; type=genetic_marker; length=86bp
CAAATTCTGTATATGCATNTATACATCTGTTCATATGTGTGTGTGTGTGT
GTGTGTGGTGTGTGTGTGCTCGCATTGGATGATGTC