Gh034, Gh034 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh034
AliasGh34
Genbank IDDQ907978
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ907978
Source Typegenomic
Repeat MotifAAG(11)
Primer 1Gh034_F: CCCTTTTGTTATCTAACTTCTGTTACTCCTAAC
Primer 2Gh034_R: CCTTTTGTTTAGCTCTTCTATACTTGAATTCC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ907978
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A13chromosomeA13:86087357..86087484 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018214.1chromosomeCM018214.1:90223471..90223586 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:104099792..104099922 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr13chromosomeAt_chr13:14215368..14215495 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A13chromosomeA13:62553910..62554037 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A13chromosomeGhir_A13:89611543..89611670 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A13chromosomeA13:92557907..92558034 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:90681883..90682010 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:89354313..89354440 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At13chromosomeAt13:67879673..67879788 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4323supercontigscaffold4323:345286..345401 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A13chromosomeGbar_A13:91543102..91543217 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A13chromosomeA13:94499660..94499775 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017622.1chromosomeCM017622.1:91989803..91989921 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017700.1chromosomeCM017700.1:92362888..92363003 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A13chromosomeA13:92944204..92944331 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:102113517..102113647 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ907978DQ907978Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch13_At.13N/A101.84Gh034View
2TM-1 x 3-79, RIL (2012)AD_ch13_At.13N/A100.96Gh034View
3TM-1 x 3-79, RIL (2014)AD_ch13_At.13N/A97.2Gh034View
4TM-1 x 3-79, RIL (2012.v3)AD_ch13_At.13N/A97.2GH034View
5TM-1 x Hai-7124, BC1 (2012)AD_ch13_At.13N/A83.4Gh34-125View
Sequence
>Gh034 ID=Gh034; Name=Gh034; organism=Gossypium hirsutum; type=genetic_marker; length=129bp
CCCTTTTGTTATCTAACTTCTGTTACTCCTAACAAAGAAGAAGAAGAAGA
AGAAGAAGAAGAAGAAGAAAAAGAATAAAAAGAAGAAGAAGAAGATAGGA
ATTCAAGTATAGAAGAGCTAAACAAAAGG