DPL0745, DPL0745 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0745
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceDPL0745_orig
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0745_F: AGAATGGCATCTGATCATGTAGG
Primer 2DPL0745_R: AATTGCTGGAGGATAACAGACCT
PolymorphismP_ DPL0745
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
A09chromosomeA09:69770059..69770199 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018223.1chromosomeCM018223.1:39797172..39797321 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
CM018210.1chromosomeCM018210.1:65315209..65315358 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
D5_09chromosomeD5_09:33498291..33498440 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1
KI_09chromosomeKI_09:30587510..30587694 +Gossypioides kirkii genome ISU_v3
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:72459945..72460097 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
D10_09chromosomeD10_09:10092449..10092589 -Gossypium turneri (D10) genome NSF_v1_a2
CM016622.1chromosomeCM016622.1:15874038..15874195 -Gossypium australe (G2) genome CRI_v1.1
At_chr6chromosomeAt_chr6:51400640..51400780 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
A09chromosomeA09:64884848..64884988 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_D09chromosomeGhir_D09:41791577..41791714 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
Ghir_A09chromosomeGhir_A09:69521320..69521460 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
A09chromosomeA09:71262163..71262303 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A09chromosomeA09:71260173..71260313 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A09chromosomeA09:68193445..68193585 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
scaffold14420supercontigscaffold14420:40167..40316 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold11422supercontigscaffold11422:50352..50501 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold11422supercontigscaffold11422:49218..49367 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_D09chromosomeGbar_D09:40500399..40500548 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
Gbar_A09chromosomeGbar_A09:65762209..65762358 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
D09chromosomeD09:42931888..42932037 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
A09chromosomeA09:67218867..67219016 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017618.1chromosomeCM017618.1:67165177..67165317 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017657.1chromosomeCM017657.1:42094244..42094390 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017644.1chromosomeCM017644.1:70076032..70076181 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017709.1chromosomeCM017709.1:41271177..41271323 +Gossypium darwinii (AD5) genome HGS_v1.1
CM017696.1chromosomeCM017696.1:67183648..67183797 +Gossypium darwinii (AD5) genome HGS_v1.1
A09chromosomeA09:72628779..72628919 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr09chromosomeChr09:71728210..71728359 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr09chromosomeChr09:74908151..74908303 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
Chr09chromosomeChr09:39729380..39729526 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1
B_09chromosomeB_09:58837720..58837863 +Gossypium anomalum (B1) genome NSF_v1
Chr06chromosomeChr06:40246994..40247146 +Gossypium thurberi (D1-5) genome CRI_v1
chr06chromosomechr06:33109883..33110023 +Gossypium armourianum (D2-1) genome ISU_v1
Chr06_4041468chromosomeChr06_4041468:3312..3452 -Gossypium harknessii (D2-2) genome ISU_v1
Chr06chromosomeChr06:41570276..41570425 +Gossypium davidsonii (D3d-8) genome CRI_v1
Chr06chromosomeChr06:30537156..30537305 +Gossypium aridum (D4) genome ISU_v1
Chr06chromosomeChr06:22905289..22905438 +Gossypium gossypioides (D6) genome ISU_v1
Chr06chromosomeChr06:28099251..28099394 +Gossypium lobatum (D7) genome ISU_v1
E09chromosomeE09:14044062..14044208 -Gossypium stocksii (E1) genome NSF_v1
F09chromosomeF09:59878906..59879052 +Gossypium longicalyx (F1) genome NSF_v1
Chr09chromosomeChr09:116328165..116328305 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0745_origDPL0745_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2014)AD_ch09_At.09N/A74.1DPL0745bView
2Monsanto SSR Bin Map, (2009)AD_ch09_At.09N/A61DPL0745bView
3TM-1 x 3-79, RIL (2014)AD_ch23_Dt.09N/A78DPL0745aView
4Monsanto SSR Bin Map, (2009)AD_ch23_Dt.09N/A41DPL0745aView
5(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch23_Dt.09N/A89.5MON_DPL0745View
6TM-1 x 3-79, RIL (2014)AD_ch09_At.09N/A44.6DPL0745cView
7Yumian-1 x 7235, RIL (2015)AD_ch23_Dt.09N/A82DPL0745View
8CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch23_Dt.09N/A82.1DPL0745View
9TM-1 x 3-79, RIL (2012.v3)AD_ch09_At.09N/A44.58DPL0745cView
10TM-1 x 3-79, RIL (2012.v3)AD_ch09_At.09N/A74.13DPL0745bView
11TM-1 x 3-79, RIL (2012.v3)AD_ch23_Dt.09N/A78.01DPL0745aView
Sequence
>DPL0745 ID=DPL0745; Name=DPL0745; organism=Gossypium hirsutum; type=genetic_marker; length=153bp
AGAATGGCATCTGATCATGTAGGAAAACCAAATGAGCAGACGACAGATAA
AAATACAACACCCACATCATCACAACAACAACAACAACAAGGACCTCCAA
TCCAATGGCCGCCACAAAGTCATCCTCCGCAGGTCTGTTATCCTCCAGCA
ATT