DPL0734, DPL0734 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0734
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceDPL0734_orig
Source Typegenomic
Repeat Motif(TC)8
PCR ConditionAnnealing temperature: 55
Primer 1DPL0734_F: AAAGGCACCAGCATTGGTT
Primer 2DPL0734_R: CACAGAGGCAGAGACTTAAAGACA
PolymorphismP_ DPL0734
ContactFang, David D.
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D02chromosomeD02:42619585..42619800 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A03chromosomeA03:56832833..56833045 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018204.1chromosomeCM018204.1:56833403..56833616 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018216.1chromosomeCM018216.1:39958197..39958412 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:86222092..86222307 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_03chromosomeD10_03:27051059..27051272 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016616.1chromosomeCM016616.1:71675752..71675967 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr5chromosomeDt_chr5:3333225..3333440 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr5chromosomeAt_chr5:15294652..15294864 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:40282978..40283193 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A03chromosomeA03:51660159..51660371 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:42087539..42087754 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A03chromosomeGhir_A03:59636265..59636471 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:42835852..42836067 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:60132886..60133098 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:43554000..43554215 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:58215537..58215749 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:40890750..40890965 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A03chromosomeA03:54506298..54506510 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold923supercontigscaffold923:65390..65603 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold5382supercontigscaffold5382:494189..494404 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A03chromosomeGbar_A03:56751596..56751809 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D02chromosomeGbar_D02:40562924..40563139 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:41867327..41867542 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A03chromosomeA03:57185085..57185298 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:58017947..58018160 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017624.1chromosomeCM017624.1:42720017..42720232 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:43636382..43636595 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017638.1chromosomeCM017638.1:60738090..60738303 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:57771146..57771359 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017702.1chromosomeCM017702.1:41368393..41368608 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:44275510..44275725 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A03chromosomeA03:60831751..60831963 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:50575167..50575384 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:49175939..49176154 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_03chromosomeB_03:39616336..39616551 +Gossypium anomalum (B1) genome NSF_v1n/a
chr10chromosomechr10:8136108..8137052 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_10chromosomeChr_10:7452148..7453061 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr05chromosomeChr05:40189628..40189843 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:6675409..6675622 +Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:7111666..7111879 +Gossypium lobatum (D7) genome ISU_v1n/a
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0734_origDPL0734_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch03_At.03N/A64.62DPL0734View
2TM-1 x 3-79, RIL (2014)AD_ch03_At.03N/A51.8DPL0734View
3TM-1 x 3-79, RIL (2012.v3)AD_ch03_At.03N/A51.75DPL0734View
Sequence
>DPL0734 ID=DPL0734; Name=DPL0734; organism=Gossypium hirsutum; type=genetic_marker; length=216bp
AAAGGCACCAGCATTGGTTCCAGATCTTTTTGCCTTGGCTCTTTTCTCTT
GGCCTCTTCCTCCTCCCCTCTCGATTCTCTCTCTCTCTCTCCAATTCATC
CATGCTGTAAATACAATTTCATTGTCTCTTTCCCAAACTATATATCCAAT
TCTCTATCACAGCAATGAAAGTAAATAAAAATCTCTTTGATTTGTCTTTA
AGTCTCTGCCTCTGTG