DPL0674, DPL0674 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0674
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceDPL0674_orig
Source Typegenomic
Repeat Motif(AGA)11
PCR ConditionAnnealing temperature: 55
Primer 1DPL0674_F: CTCACTTACTCTGGGCCTCTTCTA
Primer 2DPL0674_R: TGCTATGAGCAATCTAGCACAAGT
PolymorphismP_ DPL0674
ContactFang, David D.
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
A02chromosomeA02:12165412..12165645 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018203.1chromosomeCM018203.1:11618400..11618657 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:13090852..13091050 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
At_chr3chromosomeAt_chr3:85808434..85808667 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
A02chromosomeA02:11760322..11760555 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_A02chromosomeGhir_A02:11735117..11735350 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
A02chromosomeA02:11284110..11284343 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A02chromosomeA02:11918027..11918260 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A02chromosomeA02:11973260..11973493 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
scaffold172supercontigscaffold172:718585..718842 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_A02chromosomeGbar_A02:11680877..11681134 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
A02chromosomeA02:11617683..11617946 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017611.1chromosomeCM017611.1:11749266..11749514 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017637.1chromosomeCM017637.1:12153618..12153848 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017689.1chromosomeCM017689.1:11789655..11789921 -Gossypium darwinii (AD5) genome HGS_v1.1
A02chromosomeA02:12106493..12106723 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr03chromosomeChr03:117765455..117765653 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0674_origDPL0674_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch02_At.02N/A68.25DPL0674View
2Emian-22 x 3-79, BC1 (2011)AD_ch02_At.02N/A71.97DPL0674View
3AD-genome wide Reference Map (2009)AD_ch02_At.02N/A73DPL0674View
4TM-1 x 3-79, RIL (2014)AD_ch02_At.02N/A69.1DPL0674View
5TM-1 x 3-79, RIL (2012.v3)AD_ch02_At.02N/A69.1DPL0674View
6PD 94042 x (AD)4-08, F2 (2016)AD_ch02_At.02N/A12.9DPL0674View
Sequence
>DPL0674 ID=DPL0674; Name=DPL0674; organism=Gossypium hirsutum; type=genetic_marker; length=199bp
CTCACTTACTCTGGGCCTCTTCTAATTTTTCTTCATTGCTAATTTCTTCG
AGGGGCAGTAGTAGCGCTCTCCTTAGCAGAAGAAGAAGAAGAAGAAGAAG
AAGAAGAAGAAGTGAGAATGAATCCCACAAATTTCATAGAAAAAGAAGGG
AGGTTCCCTTATACGCCCAATTAAAACTTGTGCTAGATTGCTCATAGCA